Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G323400.1 | Wheat | nucleus | 94.93 | 96.26 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 93.55 | 95.31 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 92.63 | 80.72 |
| Os02t0731700-02 | Rice | nucleus | 69.12 | 66.37 |
| CDY04231 | Canola | mitochondrion | 6.45 | 63.64 |
| EES05581 | Sorghum | nucleus, plastid | 67.05 | 59.63 |
| Zm00001d017939_P001 | Maize | nucleus | 63.13 | 58.92 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 55.07 | 55.32 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 41.71 | 49.32 |
| KRH13468 | Soybean | cytosol | 11.06 | 48.48 |
| GSMUA_Achr10P... | Banana | nucleus | 35.48 | 43.87 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 42.17 | 42.36 |
| CDY65591 | Canola | nucleus | 32.95 | 41.09 |
| CDY67920 | Canola | nucleus | 32.95 | 41.09 |
| CDY03851 | Canola | nucleus | 35.02 | 40.86 |
| KRH35955 | Soybean | nucleus | 38.71 | 40.1 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 37.56 | 39.76 |
| Solyc04g007210.2.1 | Tomato | nucleus | 39.17 | 39.72 |
| KRG90815 | Soybean | nucleus | 38.02 | 39.47 |
| CDY44890 | Canola | nucleus | 35.48 | 38.4 |
| Bra033925.1-P | Field mustard | nucleus | 35.48 | 38.4 |
| CDY53119 | Canola | nucleus | 33.18 | 38.3 |
| AT1G25440.1 | Thale cress | nucleus | 36.64 | 38.13 |
| CDX77359 | Canola | nucleus | 14.06 | 38.12 |
| Bra012475.1-P | Field mustard | nucleus | 35.71 | 37.99 |
| CDY24402 | Canola | nucleus | 32.26 | 37.94 |
| CDY51133 | Canola | nucleus | 32.95 | 37.93 |
| CDX81527 | Canola | nucleus | 35.02 | 37.91 |
| Bra024750.1-P | Field mustard | nucleus | 35.94 | 37.68 |
| Solyc05g009310.2.1 | Tomato | nucleus | 37.56 | 37.3 |
| AT1G68520.1 | Thale cress | nucleus | 34.79 | 37.19 |
| PGSC0003DMT400037755 | Potato | nucleus | 38.02 | 36.91 |
| CDY04230 | Canola | nucleus | 19.12 | 36.09 |
| CDY36106 | Canola | nucleus | 27.88 | 31.51 |
| Bra004035.1-P | Field mustard | nucleus | 33.87 | 31.01 |
| Bra010994.1-P | Field mustard | nucleus | 28.34 | 30.22 |
| PGSC0003DMT400020030 | Potato | nucleus | 35.02 | 27.0 |
| TraesCS7D01G311500.1 | Wheat | nucleus | 14.52 | 21.72 |
| TraesCS6D01G108000.1 | Wheat | plastid | 18.89 | 16.6 |
| TraesCS7D01G414400.2 | Wheat | plastid | 16.82 | 15.97 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF22 | SMART:SM00336 |
| EnsemblPlantsGene:TraesCS6D01G274100 | EnsemblPlants:TraesCS6D01G274100.1 | InterPro:Znf_B-box | TIGR:cd00021 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:382588591..382589970
Molecular Weight (calculated)
47029.0 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.640
Length
434 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSDQKAAG GGGAVGGKAA RACDGCMRRR ARWYCAADDA FLCQGCDTSV HSANPLARRH ERLRLRATSP LPAEGVAAVK GSPATTSKCL DVAPAWPKRK
101: ARTRRPPVKS VGQLLSRRLV VPEVGAGESS TSDERSAPEE EQLLYRVPVF DPALAEFCSP PPIDDSRHSE DVEGAVEDAK ELMAEQSPVQ ELPDCFASFG
201: PTDADLREFA ADMEALLGQG LDDGNEMEDS FYMEALGLIS PPGEHDGRVK VEADGGLVSR SNGVLASGHD LKREFSGSPP TLVDDDDSFE HKTSSASNGD
301: AVDDAQFLKR SLDLRLNYEA VMESWGSSPW TDGRRPPGQL DDLLLHDHAV HGMWTAGGGG GGRHGEAAWP PRPRTDEWRE ARVSRYREKR RTRLFAKKIR
401: YEVRKLNAEK RPRMKGRFVK RTGAAAAAAP CAVT
101: ARTRRPPVKS VGQLLSRRLV VPEVGAGESS TSDERSAPEE EQLLYRVPVF DPALAEFCSP PPIDDSRHSE DVEGAVEDAK ELMAEQSPVQ ELPDCFASFG
201: PTDADLREFA ADMEALLGQG LDDGNEMEDS FYMEALGLIS PPGEHDGRVK VEADGGLVSR SNGVLASGHD LKREFSGSPP TLVDDDDSFE HKTSSASNGD
301: AVDDAQFLKR SLDLRLNYEA VMESWGSSPW TDGRRPPGQL DDLLLHDHAV HGMWTAGGGG GGRHGEAAWP PRPRTDEWRE ARVSRYREKR RTRLFAKKIR
401: YEVRKLNAEK RPRMKGRFVK RTGAAAAAAP CAVT
001: MTSHQNIKIS EKIMISKYQE DVKQPRACEL CLNKHAVWYC ASDDAFLCHV CDESVHSANH VATKHERVCL RTNEISNDVR GGTTLTSVWH SGFRRKARTP
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS
Arabidopsis Description
B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I1N0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.