Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY03851 | Canola | nucleus | 75.06 | 84.14 |
| Bra012475.1-P | Field mustard | nucleus | 82.01 | 83.82 |
| CDY51133 | Canola | nucleus | 75.54 | 83.55 |
| CDY65591 | Canola | nucleus | 69.3 | 83.05 |
| CDY53119 | Canola | nucleus | 74.34 | 82.45 |
| CDY67920 | Canola | nucleus | 68.59 | 82.18 |
| Bra024750.1-P | Field mustard | nucleus | 80.82 | 81.4 |
| CDX77359 | Canola | nucleus | 28.3 | 73.75 |
| AT1G68520.1 | Thale cress | nucleus | 61.63 | 63.3 |
| KRH13468 | Soybean | cytosol | 13.43 | 56.57 |
| CDY24402 | Canola | nucleus | 46.28 | 52.3 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 47.96 | 46.3 |
| KRH35955 | Soybean | nucleus | 46.04 | 45.82 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 39.09 | 44.41 |
| CDY36106 | Canola | nucleus | 40.77 | 44.27 |
| KRG90815 | Soybean | nucleus | 44.36 | 44.26 |
| GSMUA_Achr10P... | Banana | nucleus | 36.69 | 43.59 |
| Solyc04g007210.2.1 | Tomato | nucleus | 44.36 | 43.22 |
| Solyc05g009310.2.1 | Tomato | nucleus | 45.08 | 43.02 |
| PGSC0003DMT400037755 | Potato | nucleus | 45.32 | 42.28 |
| Bra010994.1-P | Field mustard | nucleus | 41.25 | 42.26 |
| GSMUA_Achr10P... | Banana | nucleus | 38.61 | 42.15 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 38.13 | 41.95 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 32.37 | 40.54 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 41.01 | 39.58 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 41.01 | 39.58 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 40.77 | 39.35 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 42.45 | 39.16 |
| AT1G73870.1 | Thale cress | nucleus | 36.69 | 39.03 |
| Zm00001d045661_P001 | Maize | nucleus | 41.49 | 37.94 |
| EER88191 | Sorghum | nucleus, plastid | 42.21 | 37.13 |
| Os06t0264200-00 | Rice | plastid | 42.69 | 37.01 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 37.65 | 36.68 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 38.13 | 36.64 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 37.41 | 36.62 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 35.97 | 36.59 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 35.97 | 36.59 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 35.97 | 36.59 |
| Os03t0711100-01 | Rice | plastid | 36.93 | 36.58 |
| Os02t0731700-02 | Rice | nucleus | 39.57 | 36.5 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 35.97 | 36.5 |
| Zm00001d013443_P001 | Maize | plastid | 35.01 | 35.35 |
| EER93585 | Sorghum | plastid | 35.49 | 35.24 |
| Zm00001d017939_P001 | Maize | nucleus | 38.61 | 34.62 |
| EES05581 | Sorghum | nucleus, plastid | 39.81 | 34.02 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 38.13 | 31.93 |
| Zm00001d033719_P001 | Maize | plastid | 35.25 | 31.21 |
| PGSC0003DMT400020030 | Potato | nucleus | 41.97 | 31.08 |
| AT1G49130.1 | Thale cress | nucleus | 23.02 | 29.45 |
| AT1G07050.2 | Thale cress | nucleus | 12.95 | 27.27 |
| AT5G14370.1 | Thale cress | nucleus | 16.55 | 20.35 |
| AT4G25990.2 | Thale cress | nucleus | 18.47 | 18.83 |
| AT5G57180.2 | Thale cress | nucleus, plastid | 19.18 | 18.39 |
Protein Annotations
| MapMan:15.5.1.2 | EntrezGene:839130 | ProteinID:AAG50803.1 | ProteinID:AEE30625.1 | EMBL:AK226436 | ArrayExpress:AT1G25440 |
| EnsemblPlantsGene:AT1G25440 | RefSeq:AT1G25440 | TAIR:AT1G25440 | RefSeq:AT1G25440-TAIR-G | EnsemblPlants:AT1G25440.1 | TAIR:AT1G25440.1 |
| EMBL:AY093174 | Unigene:At.27494 | EMBL:BT015778 | InterPro:CCT_domain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0046872 | InterPro:IPR000315 | InterPro:IPR010402 |
| RefSeq:NP_173915.2 | PFAM:PF00643 | PFAM:PF06203 | PO:PO:0000293 | PO:PO:0009025 | PFscan:PS50119 |
| PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 | UniProt:Q5XF38 | UniProt:Q8RWD0 | SMART:SM00336 |
| UniParc:UPI0000196E8D | InterPro:Znf_B-box | SEG:seg | : | : | : |
Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
Coordinates
chr1:-:8933716..8935544
Molecular Weight (calculated)
46934.1 Da
IEP (calculated)
4.992
GRAVY (calculated)
-0.637
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.