Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 97.32 | 97.56 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 97.08 | 97.32 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 95.38 | 95.61 |
| Os03t0711100-01 | Rice | plastid | 73.48 | 71.73 |
| EER93585 | Sorghum | plastid | 69.83 | 68.33 |
| Zm00001d013443_P001 | Maize | plastid | 66.91 | 66.59 |
| Zm00001d033719_P001 | Maize | plastid | 68.61 | 59.87 |
| CDY04231 | Canola | mitochondrion | 5.84 | 54.55 |
| KRH13468 | Soybean | cytosol | 10.71 | 44.44 |
| CDY65591 | Canola | nucleus | 35.28 | 41.67 |
| CDY67920 | Canola | nucleus | 35.04 | 41.38 |
| CDX77359 | Canola | nucleus | 15.82 | 40.62 |
| CDY03851 | Canola | nucleus | 35.77 | 39.52 |
| KRH35955 | Soybean | nucleus | 39.66 | 38.9 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 40.88 | 38.89 |
| CDY53119 | Canola | nucleus | 35.52 | 38.83 |
| CDY51133 | Canola | nucleus | 35.04 | 38.2 |
| KRG90815 | Soybean | nucleus | 38.69 | 38.04 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 39.9 | 37.96 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 39.17 | 37.62 |
| CDY04230 | Canola | nucleus | 20.68 | 36.96 |
| Bra024750.1-P | Field mustard | nucleus | 36.98 | 36.72 |
| CDY24402 | Canola | nucleus | 32.6 | 36.31 |
| PGSC0003DMT400037755 | Potato | nucleus | 39.17 | 36.02 |
| Solyc04g007210.2.1 | Tomato | nucleus | 37.47 | 35.98 |
| AT1G25440.1 | Thale cress | nucleus | 36.5 | 35.97 |
| Solyc05g009310.2.1 | Tomato | nucleus | 38.2 | 35.93 |
| Bra012475.1-P | Field mustard | nucleus | 35.52 | 35.78 |
| AT1G68520.1 | Thale cress | nucleus | 35.04 | 35.47 |
| CDY44890 | Canola | nucleus | 34.55 | 35.41 |
| CDX81527 | Canola | nucleus | 34.55 | 35.41 |
| Bra033925.1-P | Field mustard | nucleus | 34.06 | 34.91 |
| Bra004035.1-P | Field mustard | nucleus | 35.04 | 30.38 |
| CDY36106 | Canola | nucleus | 27.98 | 29.95 |
| Bra010994.1-P | Field mustard | nucleus | 28.95 | 29.24 |
| PGSC0003DMT400020030 | Potato | nucleus | 34.55 | 25.22 |
| TraesCS7B01G215100.1 | Wheat | nucleus | 14.6 | 20.34 |
| TraesCS6B01G146200.2 | Wheat | plastid | 20.92 | 17.41 |
| TraesCS7B01G322600.1 | Wheat | plastid | 17.76 | 15.97 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G045700.1 | EnsemblPlantsGene:TraesCS4B01G045700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF20 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr4B:+:32896637..32898153
Molecular Weight (calculated)
44872.7 Da
IEP (calculated)
6.453
GRAVY (calculated)
-0.565
Length
411 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAGAAIGA RAARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLPS SSSPAATSSL QHADPDEPAW LHGLKRRPRT PRSKPGTVGK
101: HGAPAAAKAA AASAVPDLEA EDSGSGIVGD NDDVHGVEVD DEDLLYRVPV FDPMLAELYN PMPVDEFREP LEQKPAVCCF SSLAKQPSSE YASGVAGAAD
201: GFTGFDVVPD MELASFAADM ESLLMGGVEE GFDDLRFLDE EKPQLNLDFD MADFDDQSTA APAPEQESLE DRKRKRSDSG MILKLDYERV IDSWAHDGGS
301: PWFYGERPHI DPSDDSWLEL PAGSRGFGLG AAVTAVTGGE REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRTALPPLP PRPPMVLAGH
401: GHGGAHGRFR F
101: HGAPAAAKAA AASAVPDLEA EDSGSGIVGD NDDVHGVEVD DEDLLYRVPV FDPMLAELYN PMPVDEFREP LEQKPAVCCF SSLAKQPSSE YASGVAGAAD
201: GFTGFDVVPD MELASFAADM ESLLMGGVEE GFDDLRFLDE EKPQLNLDFD MADFDDQSTA APAPEQESLE DRKRKRSDSG MILKLDYERV IDSWAHDGGS
301: PWFYGERPHI DPSDDSWLEL PAGSRGFGLG AAVTAVTGGE REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF VKRTALPPLP PRPPMVLAGH
401: GHGGAHGRFR F
001: MVVDVESRTA SVTGEKMAAR GCDACMKRSR ASWYCPADDA FLCQSCDASI HSANHLAKRH ERVRLQSSSP TETADKTTSV WYEGFRRKAR TPRSKSCAFE
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT
Arabidopsis Description
COL7Zinc finger protein CONSTANS-LIKE 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.