Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 97.32 | 97.32 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 97.32 | 97.08 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 95.12 | 95.12 |
| Os03t0711100-01 | Rice | plastid | 72.93 | 71.02 |
| EER93585 | Sorghum | plastid | 70.24 | 68.57 |
| Zm00001d013443_P001 | Maize | plastid | 67.56 | 67.07 |
| Zm00001d033719_P001 | Maize | plastid | 68.54 | 59.66 |
| CDY04231 | Canola | mitochondrion | 5.85 | 54.55 |
| KRH13468 | Soybean | cytosol | 10.73 | 44.44 |
| CDY65591 | Canola | nucleus | 35.37 | 41.67 |
| CDY67920 | Canola | nucleus | 35.12 | 41.38 |
| CDX77359 | Canola | nucleus | 15.85 | 40.62 |
| CDY03851 | Canola | nucleus | 35.85 | 39.52 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 41.22 | 39.12 |
| CDY53119 | Canola | nucleus | 35.61 | 38.83 |
| KRH35955 | Soybean | nucleus | 39.51 | 38.66 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 40.73 | 38.66 |
| CDY51133 | Canola | nucleus | 35.12 | 38.2 |
| KRG90815 | Soybean | nucleus | 38.54 | 37.8 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 39.76 | 37.56 |
| CDY04230 | Canola | nucleus | 20.73 | 36.96 |
| Bra024750.1-P | Field mustard | nucleus | 37.07 | 36.72 |
| Solyc04g007210.2.1 | Tomato | nucleus | 38.29 | 36.68 |
| Solyc05g009310.2.1 | Tomato | nucleus | 38.78 | 36.38 |
| PGSC0003DMT400037755 | Potato | nucleus | 39.51 | 36.24 |
| CDY24402 | Canola | nucleus | 32.44 | 36.04 |
| AT1G25440.1 | Thale cress | nucleus | 36.59 | 35.97 |
| Bra012475.1-P | Field mustard | nucleus | 35.61 | 35.78 |
| AT1G68520.1 | Thale cress | nucleus | 35.37 | 35.71 |
| CDY44890 | Canola | nucleus | 34.88 | 35.66 |
| CDX81527 | Canola | nucleus | 34.88 | 35.66 |
| Bra033925.1-P | Field mustard | nucleus | 34.39 | 35.16 |
| Bra004035.1-P | Field mustard | nucleus | 35.12 | 30.38 |
| CDY36106 | Canola | nucleus | 27.8 | 29.69 |
| Bra010994.1-P | Field mustard | nucleus | 28.78 | 28.99 |
| PGSC0003DMT400020030 | Potato | nucleus | 35.12 | 25.58 |
| TraesCS7D01G311500.1 | Wheat | nucleus | 14.39 | 20.34 |
| TraesCS6D01G108000.1 | Wheat | plastid | 20.98 | 17.41 |
| TraesCS7D01G414400.2 | Wheat | plastid | 18.29 | 16.41 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:IPR000315 | InterPro:IPR010402 | PFAM:PF00643 |
| PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF20 | SMART:SM00336 |
| EnsemblPlantsGene:TraesCS4D01G046200 | EnsemblPlants:TraesCS4D01G046200.1 | InterPro:Znf_B-box | TIGR:cd00021 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:-:21775252..21776785
Molecular Weight (calculated)
44818.6 Da
IEP (calculated)
6.203
GRAVY (calculated)
-0.564
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAGAAIGA RAARACDGCM RRRARWHCAA DDAYLCQACD ASVHSANPLA RRHHRVRLPS SSSPAATSSL QHADPDEPAW LHGLKRRPRT PRSKPGMVGK
101: HGAPAAAKAA AASAVPDLEA EDSGSGIVGE NDDGHGVEVE DEDLLYRVPV FDPMLAELYN PMPVDEFREP LEQKPSVCCF SSLAGQPSSE YASGVADAAD
201: GFTGFDVVPD MELASFAADM ESLLMGGVED GFDDLRFLDE EKPQLNLDFD MADFDDQSTA APAPEQELED RKRKRSDSGM ILKLDYERVI DSWVHDGGSP
301: WFYGERPHID PSDDSWLDLP AGSRGFGLGA AVTAVTGGER EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTALPPLPP RPPMVLAAHG
401: HGGAHGRFRF
101: HGAPAAAKAA AASAVPDLEA EDSGSGIVGE NDDGHGVEVE DEDLLYRVPV FDPMLAELYN PMPVDEFREP LEQKPSVCCF SSLAGQPSSE YASGVADAAD
201: GFTGFDVVPD MELASFAADM ESLLMGGVED GFDDLRFLDE EKPQLNLDFD MADFDDQSTA APAPEQELED RKRKRSDSGM ILKLDYERVI DSWVHDGGSP
301: WFYGERPHID PSDDSWLDLP AGSRGFGLGA AVTAVTGGER EARVSRYREK RRTRLFAKKI RYEVRKLNAE KRPRMKGRFV KRTALPPLPP RPPMVLAAHG
401: HGGAHGRFRF
001: MVVDVESRTA SVTGEKMAAR GCDACMKRSR ASWYCPADDA FLCQSCDASI HSANHLAKRH ERVRLQSSSP TETADKTTSV WYEGFRRKAR TPRSKSCAFE
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT
Arabidopsis Description
COL7Zinc finger protein CONSTANS-LIKE 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9A9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.