Factsheet for PGSC0003DMT400020030

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	PGSC0003DMT400040233	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007210.2.1	Tomato	nucleus	65.9	86.68
CDY04231	Canola	mitochondrion	5.86	75.0
KRH13468	Soybean	cytosol	9.77	55.56
PGSC0003DMT400037755	Potato	nucleus	41.21	51.9
VIT_01s0011g03520.t01	Wine grape	nucleus	38.37	50.0
CDY65591	Canola	nucleus	27.35	44.25
CDY67920	Canola	nucleus	27.18	43.97
CDY03851	Canola	nucleus	28.95	43.82
CDY51133	Canola	nucleus	28.42	42.44
Bra012475.1-P	Field mustard	nucleus	30.73	42.4
PGSC0003DMT400014362	Potato	nucleus	30.2	42.39
AT1G25440.1	Thale cress	nucleus	31.08	41.97
GSMUA_Achr10P...	Banana	nucleus	26.11	41.88
Bra024750.1-P	Field mustard	nucleus	30.55	41.55
CDY53119	Canola	nucleus	27.53	41.22
GSMUA_Achr4P30670_001	Banana	nucleus	26.47	40.6
GSMUA_Achr7P12560_001	Banana	nucleus	23.8	40.24
CDY44890	Canola	nucleus	28.6	40.15
CDX81527	Canola	nucleus	28.42	39.9
Bra033925.1-P	Field mustard	nucleus	28.06	39.4
GSMUA_Achr7P18710_001	Banana	plastid	26.47	39.31
CDY24402	Canola	nucleus	25.58	39.02
GSMUA_Achr10P...	Banana	nucleus	26.47	39.01
AT1G68520.1	Thale cress	nucleus	28.06	38.92
TraesCS7D01G209000.1	Wheat	nucleus	28.95	37.73
TraesCS7B01G113400.1	Wheat	nucleus	28.6	37.27
TraesCS7A01G206200.1	Wheat	nucleus	28.6	37.27
Bra004035.1-P	Field mustard	nucleus	30.91	36.71
CDY36106	Canola	nucleus	24.87	36.46
Zm00001d037327_P001	Maize	mitochondrion, nucleus	28.95	36.06
CDX77359	Canola	nucleus	10.12	35.62
Os03t0711100-01	Rice	plastid	26.47	35.39
Bra010994.1-P	Field mustard	nucleus	25.58	35.38
Zm00001d045661_P001	Maize	nucleus	28.6	35.31
TraesCS6A01G293200.1	Wheat	nucleus	26.64	35.21
TraesCS4D01G046200.1	Wheat	nucleus, plastid	25.58	35.12
TraesCS6D01G274100.1	Wheat	nucleus	27.0	35.02
Os06t0264200-00	Rice	plastid	29.84	34.93
TraesCS6B01G323400.1	Wheat	nucleus	26.47	34.81
TraesCS4A01G268500.1	Wheat	nucleus, plastid	25.22	34.63
HORVU4Hr1G007420.1	Barley	nucleus, plastid	25.22	34.63
EER88191	Sorghum	nucleus, plastid	29.13	34.6
TraesCS4B01G045700.1	Wheat	nucleus, plastid	25.22	34.55
Os02t0731700-02	Rice	nucleus	27.0	33.63
Zm00001d013443_P001	Maize	plastid	24.16	32.93
EER93585	Sorghum	plastid	23.8	31.9
Zm00001d017939_P001	Maize	nucleus	26.29	31.83
CDY04230	Canola	nucleus	12.97	31.74
EES05581	Sorghum	nucleus, plastid	26.64	30.74
HORVU6Hr1G073170.1	Barley	nucleus	26.82	30.32
Zm00001d033719_P001	Maize	plastid	25.22	30.15
PGSC0003DMT400032849	Potato	nucleus	9.24	16.1
PGSC0003DMT400059170	Potato	plastid	11.72	15.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400020030	EnsemblPlantsGene:PGSC0003DMG400007749	EntrezGene:102582864	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:PC-Esterase	InterPro:Znf_B-box
PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	PFAM:PF00643	PFAM:PF13839	PFscan:PS50119	PGSC:PGSC0003DMG400007749
SEG:seg	SMART:SM00336	UniParc:UPI00029625F6	UniProt:M1ACX0	MapMan:15.5.1.2	:

Description

Transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400007749]

Coordinates

chr4:-:1419075..1427489

Molecular Weight (calculated)

64291.4 Da

IEP (calculated)

5.195

GRAVY (calculated)

-0.632

Length

563 amino acids

Sequence
(BLAST)

001: MSSEKKLANA VGAKTARACD NCIRKRARWY CAADDAFLCQ SCDSSVHSAN PLARRHERVR LKTSSIKSSD EFPNLGSTVS GSGSGSESVP SWHRGFTRKA
101: RTPRHGNKHA KRVKSTEEEE EDEEEMKNPI QLVVPEILSD ENSHDENEEE QLLYRVPIFD PFVEDGSNYG NKYSSNKVDF NQDMNTFQGL LAPSEMELAD
201: FAADVECLLG KGLDDEESFN YMEGLGFLEK HDEKLVKVED EGEMGFVNMV STNNHDINQV DYSDFDMVGE TFELKFDYDS QVMSNLDEDK KVEFGEINYD
301: SGKNNNKIML NLDYESVLKS WADKRSPWTM GERPEVDFND CWPVCMGNCG KIHSYGDIGI VNRHGGGGVD EGREARVLRY KEKRRTRLFS KKIRFDGKAL
401: LEKMKGKNIV FVGDSLGYNQ WESLACLLHA AFPSSKYVYQ SRDSLITLKF PEYEVSVQYL RNRFLVDISL EKVGRILKLD SITKTSIWEG ADVLIFNSYH
501: WWTHTGILQG WDYLEVHGKL LKDMDRMKAY NIGLNTWAKW IDTNIDPNKT SVFFQGIPAV HFS

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.