CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96686
KXG19676
KXG30786
OQU80443

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	EER96686	AT1G60010.1	21798944
AT1G68520.1	KXG19676	AT1G60010.1	21798944
AT1G68520.1	KXG30786	AT1G60010.1	21798944
AT1G68520.1	OQU80443	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037327_P001	Maize	mitochondrion, nucleus	82.28	86.28
Zm00001d045661_P001	Maize	nucleus	80.17	83.33
TraesCS7D01G209000.1	Wheat	nucleus	61.18	67.13
TraesCS7A01G206200.1	Wheat	nucleus	60.97	66.9
TraesCS7B01G113400.1	Wheat	nucleus	60.97	66.9
CDY04231	Canola	mitochondrion	6.12	65.91
Os06t0264200-00	Rice	plastid	66.88	65.9
EES05581	Sorghum	nucleus, plastid	54.64	53.07
GSMUA_Achr4P30670_001	Banana	nucleus	39.87	51.5
KRH13468	Soybean	cytosol	10.55	50.51
GSMUA_Achr10P...	Banana	nucleus	33.97	45.87
CDY03851	Canola	nucleus	35.65	45.43
CDY67920	Canola	nucleus	33.33	45.4
CDY65591	Canola	nucleus	33.12	45.11
VIT_01s0011g03520.t01	Wine grape	nucleus	40.51	44.44
CDX77359	Canola	nucleus	14.77	43.75
CDY51133	Canola	nucleus	33.97	42.71
CDY53119	Canola	nucleus	33.76	42.55
Bra012475.1-P	Field mustard	nucleus	36.5	42.4
AT1G25440.1	Thale cress	nucleus	37.13	42.21
KRG90815	Soybean	nucleus	37.13	42.11
Bra024750.1-P	Field mustard	nucleus	36.5	41.79
KRH35955	Soybean	nucleus	36.71	41.53
CDY44890	Canola	nucleus	35.02	41.4
Solyc04g007210.2.1	Tomato	nucleus	37.34	41.36
CDX81527	Canola	nucleus	34.81	41.15
Bra033925.1-P	Field mustard	nucleus	34.81	41.15
AT1G68520.1	Thale cress	nucleus	34.6	40.39
CDY04230	Canola	nucleus	19.41	40.0
Solyc05g009310.2.1	Tomato	nucleus	36.71	39.82
CDY24402	Canola	nucleus	30.59	39.3
EER93585	Sorghum	plastid	34.39	38.81
PGSC0003DMT400037755	Potato	nucleus	36.5	38.7
Bra004035.1-P	Field mustard	nucleus	33.33	33.33
CDY36106	Canola	nucleus	26.58	32.81
Bra010994.1-P	Field mustard	nucleus	27.64	32.19
PGSC0003DMT400020030	Potato	nucleus	34.6	29.13
KXG24303	Sorghum	mitochondrion, nucleus	13.71	22.03
EES04516	Sorghum	plastid	19.83	19.34
KXG20763	Sorghum	plastid	13.92	14.54

Protein Annotations

MapMan:15.5.1.2	EntrezGene:8065765	UniProt:C5Z836	InterPro:CCT_domain	EnsemblPlants:EER88191	ProteinID:EER88191
ProteinID:EER88191.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	PFAM:PF00643
PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF22	SMART:SM00336
EnsemblPlantsGene:SORBI_3010G108500	unigene:Sbi.20190	UniParc:UPI0001A894C8	RefSeq:XP_002436824.1	InterPro:Znf_B-box	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:10798048..10800067

Molecular Weight (calculated)

50341.5 Da

IEP (calculated)

5.016

GRAVY (calculated)

-0.483

Length

474 amino acids

Sequence
(BLAST)

001: MIATTGSSAK TAAAAAVGGK SARACDGCLR RRARWYCAAD DAFLCQGCDT SVHSANPLAR RHERLRLQPA AASSSPLHTP PRTGAAANNK RERHDEVVPA
101: WFRRKARTPR GGHAKSVGGQ ALSRSRRLGV VVPHAAAGGG DSPDDGRSAE GEFEAEEEQL LYRVPIFDPA LAEFCSPPPA PLEDAAALAS SCNEDGAVED
201: PANSKPDPGP ATPAPAPVVQ FFPDSGHANF EPTDAELREF AADMEALLGH GLDDGNEEDS SFYMETLGLL DPVEVGDDAT RVKVETDGGS ACGEASGTLA
301: CALELLDPAE VSDEMLDIDF NYGSPLDTMM DDEKAASSDT GGADDAQFLQ TSLSLTLNYE AIIQSWGSSP WTAGGERPHV KLDDSWPHTN MWVVGGVAGH
401: GGEDLLLGTA RLGMDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ATAGGSSLAI AGLA

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.