Factsheet for Bra012475.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51133	Canola	nucleus	91.91	99.47
AT1G25440.1	Thale cress	nucleus	83.82	82.01
Bra024750.1-P	Field mustard	nucleus	82.35	81.16
Bra033925.1-P	Field mustard	nucleus	58.09	59.1
KRH13468	Soybean	cytosol	13.73	56.57
Bra004035.1-P	Field mustard	nucleus	59.56	51.27
VIT_01s0011g03520.t01	Wine grape	nucleus	48.04	45.37
KRH35955	Soybean	nucleus	46.57	45.35
KRG90815	Soybean	nucleus	44.61	43.54
GSMUA_Achr4P30670_001	Banana	nucleus	38.97	43.32
Solyc05g009310.2.1	Tomato	nucleus	46.08	43.02
GSMUA_Achr10P...	Banana	nucleus	40.2	42.93
Bra010994.1-P	Field mustard	nucleus	42.65	42.75
GSMUA_Achr10P...	Banana	nucleus	36.76	42.73
Solyc04g007210.2.1	Tomato	nucleus	44.61	42.52
PGSC0003DMT400037755	Potato	nucleus	45.83	41.83
GSMUA_Achr7P18710_001	Banana	plastid	38.48	41.42
GSMUA_Achr7P12560_001	Banana	nucleus	32.6	39.94
Zm00001d037327_P001	Maize	mitochondrion, nucleus	42.89	38.72
TraesCS7D01G209000.1	Wheat	nucleus	40.93	38.66
TraesCS7A01G206200.1	Wheat	nucleus	40.69	38.43
TraesCS7B01G113400.1	Wheat	nucleus	40.44	38.19
Zm00001d045661_P001	Maize	nucleus	41.91	37.5
EER88191	Sorghum	nucleus, plastid	42.4	36.5
Os06t0264200-00	Rice	plastid	42.4	35.97
TraesCS6B01G323400.1	Wheat	nucleus	37.5	35.75
TraesCS6D01G274100.1	Wheat	nucleus	37.99	35.71
Os03t0711100-01	Rice	plastid	36.76	35.63
HORVU4Hr1G007420.1	Barley	nucleus, plastid	35.78	35.61
TraesCS4A01G268500.1	Wheat	nucleus, plastid	35.78	35.61
TraesCS4D01G046200.1	Wheat	nucleus, plastid	35.78	35.61
TraesCS4B01G045700.1	Wheat	nucleus, plastid	35.78	35.52
TraesCS6A01G293200.1	Wheat	nucleus	37.01	35.45
Os02t0731700-02	Rice	nucleus	39.22	35.4
Zm00001d013443_P001	Maize	plastid	35.05	34.62
Zm00001d017939_P001	Maize	nucleus	39.46	34.62
EER93585	Sorghum	plastid	35.29	34.29
EES05581	Sorghum	nucleus, plastid	39.71	33.2
HORVU6Hr1G073170.1	Barley	nucleus	37.75	30.92
PGSC0003DMT400020030	Potato	nucleus	42.4	30.73
Zm00001d033719_P001	Maize	plastid	35.05	30.36
Bra032273.1-P	Field mustard	nucleus	23.28	30.25
Bra023461.1-P	Field mustard	cytosol	11.03	29.41
Bra015548.1-P	Field mustard	nucleus	13.97	28.08
Bra006252.1-P	Field mustard	nucleus	16.42	22.26
Bra020461.1-P	Field mustard	nucleus	19.12	19.8
Bra002752.1-P	Field mustard	nucleus, plastid	18.87	19.59
Bra013939.1-P	Field mustard	plastid	17.65	18.85
Bra019134.1-P	Field mustard	plastid	17.65	18.8
Bra008763.1-P	Field mustard	nucleus, plastid	16.18	12.34
Bra023462.1-P	Field mustard	nucleus	3.92	10.06

Protein Annotations

MapMan:15.5.1.2	EnsemblPlantsGene:Bra012475	EnsemblPlants:Bra012475.1	EnsemblPlants:Bra012475.1-P	InterPro:CCT_domain	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008270	InterPro:IPR000315	InterPro:IPR010402	UniProt:M4D7L5	PFAM:PF00643	PFAM:PF06203
PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI0002541250
InterPro:Znf_B-box	SEG:seg	:	:	:	:

Description

AT1G25440 (E=4e-182) | zinc finger (B-box type) family protein

Coordinates

chrA07:-:7336081..7337430

Molecular Weight (calculated)

46109.2 Da

IEP (calculated)

5.510

GRAVY (calculated)

-0.684

Length

408 amino acids

Sequence
(BLAST)

001: MKSLASAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD TLVHSANLLA RRHERVLLKS ASKHSNHNHN HSPSSPPHEA ATWHHGFTRK PRTPRGSGKK
101: NNLSIFHDLV PEISVEDQTE SCELEEQLIC QVPVLDPTVA EQILNDVVEA KIEFPIMRSG VMMDDQEDED NAESCLNGFF PTDMELEEYA ADVETLLGRG
201: LDTESYAMEE LGLSNKEMFK IEKEEETKDM NIGICDDDRD ATAPFELSFD YESHNTYEEE VIKNIEGSGE CVKVKEEEQK NVLMLRLNYD SVISTWGGQC
301: PPWTSGEPPE RDIDISNWPF VSMGGNVRES QQKHHVGVCL PSSGFGDGGR EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRASLAVSAM
401: NSPLGVNY

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.