Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G274100.1 | Wheat | nucleus | 96.26 | 94.93 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 93.22 | 93.66 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 92.99 | 79.92 |
| Os02t0731700-02 | Rice | nucleus | 69.16 | 65.49 |
| CDY04231 | Canola | mitochondrion | 6.31 | 61.36 |
| EES05581 | Sorghum | nucleus, plastid | 67.52 | 59.22 |
| Zm00001d017939_P001 | Maize | nucleus | 64.02 | 58.92 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 54.91 | 54.4 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 41.82 | 48.77 |
| KRH13468 | Soybean | cytosol | 11.21 | 48.48 |
| GSMUA_Achr10P... | Banana | nucleus | 35.51 | 43.3 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 42.52 | 42.13 |
| CDY65591 | Canola | nucleus | 32.94 | 40.52 |
| CDY67920 | Canola | nucleus | 32.94 | 40.52 |
| KRH35955 | Soybean | nucleus | 39.49 | 40.33 |
| CDY03851 | Canola | nucleus | 35.05 | 40.32 |
| KRG90815 | Soybean | nucleus | 38.78 | 39.71 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 37.62 | 39.17 |
| Solyc04g007210.2.1 | Tomato | nucleus | 39.02 | 39.02 |
| CDX77359 | Canola | nucleus | 14.25 | 38.12 |
| CDY53119 | Canola | nucleus | 33.18 | 37.77 |
| CDY24402 | Canola | nucleus | 32.48 | 37.67 |
| Bra033925.1-P | Field mustard | nucleus | 35.28 | 37.66 |
| CDY44890 | Canola | nucleus | 35.28 | 37.66 |
| AT1G25440.1 | Thale cress | nucleus | 36.68 | 37.65 |
| Bra012475.1-P | Field mustard | nucleus | 35.75 | 37.5 |
| CDY51133 | Canola | nucleus | 32.94 | 37.4 |
| Bra024750.1-P | Field mustard | nucleus | 35.98 | 37.2 |
| CDX81527 | Canola | nucleus | 34.81 | 37.16 |
| Solyc05g009310.2.1 | Tomato | nucleus | 37.85 | 37.07 |
| AT1G68520.1 | Thale cress | nucleus | 35.05 | 36.95 |
| PGSC0003DMT400037755 | Potato | nucleus | 38.08 | 36.47 |
| CDY04230 | Canola | nucleus | 19.16 | 35.65 |
| CDY36106 | Canola | nucleus | 28.27 | 31.51 |
| Bra004035.1-P | Field mustard | nucleus | 34.11 | 30.8 |
| Bra010994.1-P | Field mustard | nucleus | 28.97 | 30.47 |
| PGSC0003DMT400020030 | Potato | nucleus | 34.81 | 26.47 |
| TraesCS7B01G215100.1 | Wheat | nucleus | 14.25 | 20.68 |
| TraesCS6B01G146200.2 | Wheat | plastid | 19.39 | 16.8 |
| TraesCS7B01G322600.1 | Wheat | plastid | 16.59 | 15.54 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G323400.1 | EnsemblPlantsGene:TraesCS6B01G323400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0008270 | InterPro:CCT_domain | InterPro:IPR000315 | InterPro:IPR010402 |
| InterPro:Znf_B-box | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF22 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 |
| PFscan:PS51017 | SEG:seg | SMART:SM00336 | TIGR:cd00021 | MapMan:15.5.1.2 | : |
Description
No Description!
Coordinates
chr6B:-:572392396..572393760
Molecular Weight (calculated)
46599.5 Da
IEP (calculated)
6.843
GRAVY (calculated)
-0.651
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGSDQKAAG GAVGGKAARA CDGCMRRWAR WYCAADDAFL CQACDTSVHS ANPLARRHER LRLRATSPLP AEGVAAVKGS PATTSKCLDV APAWPKRKAR
101: TRRPPVKSVG QLLSRRLVVP EVGAGESSTS DERRAPEEEQ LLYRVPVFDP ALAEFCSPPP IDDSRHGEDV EGAVEDTKEH MATPSPVQEL PDCFASFGPT
201: DADLREFAAD MEALLGQGLD DGNELEDSFY MEALGLISPP GEHGGRVKVE ADGSLVSRSN GVLASGHDLK REFNGSPPTL VDDDDSFEHK TSTASNGDAV
301: DDAQFLKRSL DLRLNYEAVM ESWGSSPWTD GRRPSGQLDD LLLHDHAGMW TAGGGGRHGD AAWPPRPRTD EWREARVSRY REKRRTRLFA KKIRYEVRKL
401: NAEKRPRMKG RFVKRTGGAA AAAPCAVT
101: TRRPPVKSVG QLLSRRLVVP EVGAGESSTS DERRAPEEEQ LLYRVPVFDP ALAEFCSPPP IDDSRHGEDV EGAVEDTKEH MATPSPVQEL PDCFASFGPT
201: DADLREFAAD MEALLGQGLD DGNELEDSFY MEALGLISPP GEHGGRVKVE ADGSLVSRSN GVLASGHDLK REFNGSPPTL VDDDDSFEHK TSTASNGDAV
301: DDAQFLKRSL DLRLNYEAVM ESWGSSPWTD GRRPSGQLDD LLLHDHAGMW TAGGGGRHGD AAWPPRPRTD EWREARVSRY REKRRTRLFA KKIRYEVRKL
401: NAEKRPRMKG RFVKRTGGAA AAAPCAVT
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.