CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51133	Canola	nucleus	97.34	97.08
CDY03851	Canola	nucleus	88.83	89.78
CDY65591	Canola	nucleus	76.6	82.76
CDY67920	Canola	nucleus	76.33	82.47
CDX77359	Canola	nucleus	34.84	81.88
CDY07382	Canola	nucleus	9.57	81.82
CDY04231	Canola	mitochondrion	9.04	77.27
AT1G25440.1	Thale cress	nucleus	82.45	74.34
CDY04230	Canola	nucleus	34.31	56.09
CDY44890	Canola	nucleus	58.51	54.86
CDX81527	Canola	nucleus	58.51	54.86
CDY07383	Canola	cytosol	32.98	53.91
KRH13468	Soybean	cytosol	14.1	53.54
CDY24402	Canola	nucleus	47.61	48.51
KRH35955	Soybean	nucleus	46.81	42.0
VIT_01s0011g03520.t01	Wine grape	nucleus	48.14	41.9
CDY36106	Canola	nucleus	41.49	40.62
KRG90815	Soybean	nucleus	44.95	40.43
GSMUA_Achr4P30670_001	Banana	nucleus	39.1	40.05
GSMUA_Achr10P...	Banana	nucleus	37.23	39.89
GSMUA_Achr10P...	Banana	nucleus	40.16	39.53
Solyc05g009310.2.1	Tomato	nucleus	45.21	38.9
GSMUA_Achr7P18710_001	Banana	plastid	39.1	38.79
Solyc04g007210.2.1	Tomato	nucleus	44.15	38.78
GSMUA_Achr7P12560_001	Banana	nucleus	33.78	38.14
PGSC0003DMT400037755	Potato	nucleus	45.21	38.03
TraesCS7D01G209000.1	Wheat	nucleus	40.96	35.65
Zm00001d037327_P001	Maize	mitochondrion, nucleus	42.82	35.62
TraesCS4A01G268500.1	Wheat	nucleus, plastid	38.83	35.61
TraesCS4D01G046200.1	Wheat	nucleus, plastid	38.83	35.61
HORVU4Hr1G007420.1	Barley	nucleus, plastid	38.83	35.61
TraesCS4B01G045700.1	Wheat	nucleus, plastid	38.83	35.52
TraesCS7A01G206200.1	Wheat	nucleus	40.69	35.42
TraesCS7B01G113400.1	Wheat	nucleus	40.43	35.19
Os03t0711100-01	Rice	plastid	39.1	34.92
Zm00001d045661_P001	Maize	nucleus	42.02	34.65
Zm00001d013443_P001	Maize	plastid	37.23	33.9
EER93585	Sorghum	plastid	37.77	33.81
EER88191	Sorghum	nucleus, plastid	42.55	33.76
Os06t0264200-00	Rice	plastid	42.55	33.26
Os02t0731700-02	Rice	nucleus	39.89	33.19
TraesCS6D01G274100.1	Wheat	nucleus	38.3	33.18
TraesCS6B01G323400.1	Wheat	nucleus	37.77	33.18
TraesCS6A01G293200.1	Wheat	nucleus	37.5	33.1
Zm00001d017939_P001	Maize	nucleus	39.63	32.04
EES05581	Sorghum	nucleus, plastid	40.43	31.15
CDX70561	Canola	nucleus	12.5	31.13
Zm00001d033719_P001	Maize	plastid	37.23	29.72
CDY66242	Canola	nucleus	24.47	29.3
HORVU6Hr1G073170.1	Barley	nucleus	38.03	28.71
CDY15597	Canola	nucleus	14.63	28.06
CDY66177	Canola	nucleus	14.63	27.92
PGSC0003DMT400020030	Potato	nucleus	41.22	27.53
CDY06672	Canola	nucleus	14.1	26.24
CDY10244	Canola	nucleus	13.56	25.25
CDX78575	Canola	nucleus	17.02	21.26
CDX69586	Canola	nucleus, plastid	18.35	20.91
CDY09849	Canola	nucleus	18.35	20.85
CDY38274	Canola	nucleus, plastid	21.81	20.65
CDY42769	Canola	nucleus	12.5	20.17
CDX85600	Canola	nucleus	16.76	19.81
CDY52734	Canola	nucleus, plastid	20.74	19.6
CDY47926	Canola	nucleus	20.21	19.39
CDX91067	Canola	nucleus	16.49	19.2
CDY42238	Canola	nucleus	19.68	19.17
CDX89377	Canola	plastid	18.88	18.59
CDX94392	Canola	plastid	18.62	18.23
CDX92740	Canola	plastid	17.29	16.37

Protein Annotations

MapMan:15.5.1.2	GO:A0A078IUL6	UniProt:A0A078IUL6	InterPro:CCT_domain	EnsemblPlants:CDY53119	ProteinID:CDY53119
ProteinID:CDY53119.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSBRNA2T00008624001	InterPro:IPR000315	InterPro:IPR010402
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21
SMART:SM00336	UniParc:UPI0004EE3B17	InterPro:Znf_B-box	SEG:seg	:	:

Description

BnaCnng24470DBnaCnng24470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IUL6]

Coordinates

chrLK033166:-:6933..8489

Molecular Weight (calculated)

42235.6 Da

IEP (calculated)

6.509

GRAVY (calculated)

-0.671

Length

376 amino acids

Sequence
(BLAST)

001: MKSLASAVGA KRARACDSCV KRRARWYCAA DDAFLCQSCD TLVHSANLLA RRHERVLLKS ASKHSNHNHN HSPSSPPHEA ATWHHGVSRK PRTPRGSGKK
101: NNLSIFHDLV PEISVEDQTE SCELEEQLIC QVPVLDPTVA EQLLHDVAEA KIEFPIMRSG VMMDDQEDED NAESCLNGFF PTDMELEEYA ADVESLLDMN
201: IGICDDDRDA TAPFELSFDY ESHNTYEEVI KNIEGSGECV KVKEEEKKNV LMLRLNYDSV ISTWGGQGPP WTSGEPPERD IDISSWPFVS MGGNVRESQQ
301: KHHVGGCLPS SGFGDGGREA RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ASLAASAMNS PLGVNY

Best Arabidopsis Sequence Match ( AT1G25440.1 )
(BLAST)

001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY

Arabidopsis Description

COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.