CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15597	Canola	nucleus	97.97	98.47
CDY06672	Canola	nucleus	78.17	76.24
CDY10244	Canola	nucleus	77.67	75.74
AT1G07050.2	Thale cress	nucleus	71.57	71.21
VIT_06s0004g07210.t01	Wine grape	nucleus	34.01	66.34
CDX70561	Canola	nucleus	26.9	35.1
CDX77359	Canola	nucleus	24.37	30.0
CDY07383	Canola	cytosol	24.87	21.3
CDY42769	Canola	nucleus	24.87	21.03
CDY04230	Canola	nucleus	23.86	20.43
CDX85600	Canola	nucleus	31.98	19.81
CDX91067	Canola	nucleus	31.47	19.2
CDX78575	Canola	nucleus	28.93	18.94
CDY66242	Canola	nucleus	29.95	18.79
CDX69586	Canola	nucleus, plastid	31.47	18.79
CDY09849	Canola	nucleus	31.47	18.73
CDY03851	Canola	nucleus	28.93	15.32
CDY53119	Canola	nucleus	27.92	14.63
CDY42238	Canola	nucleus	28.43	14.51
CDY44890	Canola	nucleus	29.44	14.46
CDY67920	Canola	nucleus	25.38	14.37
CDY65591	Canola	nucleus	25.38	14.37
CDY51133	Canola	nucleus	27.41	14.32
CDY47926	Canola	nucleus	28.43	14.29
CDX81527	Canola	nucleus	28.93	14.21
CDY38274	Canola	nucleus, plastid	28.43	14.11
CDY52734	Canola	nucleus, plastid	28.43	14.07
CDX89377	Canola	plastid	26.4	13.61
CDX92740	Canola	plastid	26.9	13.35
CDX94392	Canola	plastid	25.89	13.28
CDY24402	Canola	nucleus	24.37	13.01
CDY36106	Canola	nucleus	18.78	9.64
CDY07382	Canola	nucleus	0.51	2.27
CDY04231	Canola	mitochondrion	0.51	2.27

Protein Annotations

EnsemblPlants:CDY66177	EnsemblPlantsGene:GSBRNA2T00052225001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	PANTHER:PTHR31874
PANTHER:PTHR31874:SF18	PFAM:PF06203	PFscan:PS51017	ProteinID:CDY66177	ProteinID:CDY66177.1	SEG:seg
UniParc:UPI0004EDACF5	UniProt:A0A078JLB2	MapMan:15.5.1.2	:	:	:

Description

BnaC08g46470DBnaC08g46470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JLB2]

Coordinates

chrLK035121:-:18472..19465

Molecular Weight (calculated)

23327.9 Da

IEP (calculated)

5.079

GRAVY (calculated)

-1.265

Length

197 amino acids

Sequence
(BLAST)

001: MDTQRLPKKE EDDYQPSSTI ESINAFSRED RHNYSMDDFD SIFDLNLDGS KCSQELTWDF FKEDHEDVEE EEKRLSTDQE GSSSGGWDNN MSTDYEDKEL
101: SLKLNLNHQE VINAWSDRPQ QPLWTNTSLL RGPANALYSG EVPVMDEGRN MRREASVLRY KEKRQSRLFS KKIRYQVRKL NADKRPRFKG RFVRRET

Best Arabidopsis Sequence Match ( AT1G07050.1 )
(BLAST)

001: MDTQRLPKKE EEEEEDHLLS STFESINGHS RDQHNHSIDD FESIFDITID NLSCSNELTW DFWEEDEDED VGEEEKRSST DQEGSSFGFW ENKPTDYEDK
101: DLGLKLNLNH QEVIDAWSDH QKPLWTDTST LDNSVYRGEV PVIEEKRNMR REASVLRYKE KRQSRLFSKK IRYQVRKLNA DKRPRFKGRF VKRET

Arabidopsis Description

CCT motif family protein [Source:TAIR;Acc:AT1G07050]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.