Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68520.1 | CDY24507 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY30923 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY69854 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | CDY70563 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033925.1-P | Field mustard | nucleus | 97.51 | 97.51 |
| CDX81527 | Canola | nucleus | 97.26 | 97.26 |
| CDY07382 | Canola | nucleus | 9.48 | 86.36 |
| CDY04231 | Canola | mitochondrion | 9.23 | 84.09 |
| CDY07383 | Canola | cytosol | 47.38 | 82.61 |
| CDY04230 | Canola | nucleus | 44.64 | 77.83 |
| AT1G68520.1 | Thale cress | nucleus | 76.56 | 75.62 |
| CDY67920 | Canola | nucleus | 53.37 | 61.49 |
| CDY65591 | Canola | nucleus | 53.37 | 61.49 |
| CDY51133 | Canola | nucleus | 55.86 | 59.42 |
| CDY03851 | Canola | nucleus | 55.11 | 59.41 |
| CDY53119 | Canola | nucleus | 54.86 | 58.51 |
| KRH13468 | Soybean | cytosol | 12.97 | 52.53 |
| CDX77359 | Canola | nucleus | 20.7 | 51.88 |
| CDY24402 | Canola | nucleus | 41.65 | 45.26 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 47.13 | 43.75 |
| KRH35955 | Soybean | nucleus | 44.64 | 42.72 |
| GSMUA_Achr10P... | Banana | nucleus | 40.4 | 42.41 |
| KRG90815 | Soybean | nucleus | 44.14 | 42.34 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 37.91 | 41.42 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 38.9 | 41.16 |
| Solyc04g007210.2.1 | Tomato | nucleus | 43.39 | 40.65 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 33.42 | 40.24 |
| GSMUA_Achr10P... | Banana | nucleus | 34.91 | 39.89 |
| Solyc05g009310.2.1 | Tomato | nucleus | 41.9 | 38.44 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 40.9 | 37.96 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 40.65 | 37.73 |
| CDY36106 | Canola | nucleus | 35.91 | 37.5 |
| PGSC0003DMT400037755 | Potato | nucleus | 41.65 | 37.36 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 40.15 | 37.27 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 41.4 | 36.73 |
| Zm00001d045661_P001 | Maize | nucleus | 41.15 | 36.18 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 38.4 | 35.48 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 37.66 | 35.45 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 37.66 | 35.28 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 35.91 | 35.12 |
| EER88191 | Sorghum | nucleus, plastid | 41.4 | 35.02 |
| Os02t0731700-02 | Rice | nucleus | 39.4 | 34.96 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 35.66 | 34.88 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 35.66 | 34.88 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 35.41 | 34.55 |
| Os06t0264200-00 | Rice | plastid | 40.65 | 33.89 |
| Os03t0711100-01 | Rice | plastid | 35.41 | 33.73 |
| Zm00001d013443_P001 | Maize | plastid | 34.16 | 33.17 |
| Zm00001d017939_P001 | Maize | nucleus | 38.4 | 33.12 |
| EES05581 | Sorghum | nucleus, plastid | 39.9 | 32.79 |
| EER93585 | Sorghum | plastid | 34.16 | 32.62 |
| CDX70561 | Canola | nucleus | 11.72 | 31.13 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 37.91 | 30.52 |
| CDY66242 | Canola | nucleus | 23.69 | 30.25 |
| CDY15597 | Canola | nucleus | 14.46 | 29.59 |
| CDY66177 | Canola | nucleus | 14.46 | 29.44 |
| Zm00001d033719_P001 | Maize | plastid | 34.41 | 29.3 |
| PGSC0003DMT400020030 | Potato | nucleus | 40.15 | 28.6 |
| CDY06672 | Canola | nucleus | 13.97 | 27.72 |
| CDY10244 | Canola | nucleus | 13.97 | 27.72 |
| CDY42769 | Canola | nucleus | 12.47 | 21.46 |
| CDY09849 | Canola | nucleus | 17.46 | 21.15 |
| CDX85600 | Canola | nucleus | 16.71 | 21.07 |
| CDX78575 | Canola | nucleus | 15.71 | 20.93 |
| CDX69586 | Canola | nucleus, plastid | 17.21 | 20.91 |
| CDX91067 | Canola | nucleus | 16.46 | 20.43 |
| CDY38274 | Canola | nucleus, plastid | 19.2 | 19.4 |
| CDY52734 | Canola | nucleus, plastid | 18.7 | 18.84 |
| CDY42238 | Canola | nucleus | 17.96 | 18.65 |
| CDY47926 | Canola | nucleus | 18.2 | 18.62 |
| CDX89377 | Canola | plastid | 17.46 | 18.32 |
| CDX94392 | Canola | plastid | 17.21 | 17.97 |
| CDX92740 | Canola | plastid | 16.71 | 16.88 |
Protein Annotations
| MapMan:15.5.1.2 | GO:A0A078I1Z8 | UniProt:A0A078I1Z8 | InterPro:CCT_domain | EnsemblPlants:CDY44890 | ProteinID:CDY44890 |
| ProteinID:CDY44890.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00081038001 | InterPro:IPR000315 | InterPro:IPR010402 |
| PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF21 |
| SMART:SM00336 | UniParc:UPI0004EEE1D5 | InterPro:Znf_B-box | SEG:seg | : | : |
Description
BnaA02g13920DBnaA02g13920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1Z8]
Coordinates
chrLK032605:+:51259..53186
Molecular Weight (calculated)
45397.5 Da
IEP (calculated)
5.198
GRAVY (calculated)
-0.707
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKNLANVVG GKTARACDSC LKRRARWYCA ADDAFLCHSC DGSVHSANPL ARRHERVLLK SASPGKQRHD SSSPPHPPTW HQGFTRKART PRGGKKSHTM
101: IFHDLVPEMS SEDQSFEVEE QLIFEVPVLN PMSHEKCLNE SVETKIELPL MSMCFKGSDE EDDNAESCLN GLFPTDTELA QFSADVEILL GGGTDREYNM
201: EELGLGEMLK VEKEEVDEEE EVATIDVCDL DAADEITPFV ISFENEYSQK TNLEEEDEKQ DVENNILDVG VNEMSCSIKE EKNEKVHMLR LDYESVISTW
301: GGQGTPWTAR ETPQIDLNML CCPTDSMVES GGEAHHHNYV RGLGLHMGEA GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSIAAA
401: H
101: IFHDLVPEMS SEDQSFEVEE QLIFEVPVLN PMSHEKCLNE SVETKIELPL MSMCFKGSDE EDDNAESCLN GLFPTDTELA QFSADVEILL GGGTDREYNM
201: EELGLGEMLK VEKEEVDEEE EVATIDVCDL DAADEITPFV ISFENEYSQK TNLEEEDEKQ DVENNILDVG VNEMSCSIKE EKNEKVHMLR LDYESVISTW
301: GGQGTPWTAR ETPQIDLNML CCPTDSMVES GGEAHHHNYV RGLGLHMGEA GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR FVKRSSIAAA
401: H
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
Arabidopsis Description
COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.