CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002752.1-P	Field mustard	nucleus, plastid	94.71	95.67
CDY52734	Canola	nucleus, plastid	94.21	93.97
CDY42238	Canola	nucleus	74.06	76.17
CDY47926	Canola	nucleus	74.31	75.26
AT5G57180.2	Thale cress	nucleus, plastid	74.56	68.05
CDX89377	Canola	plastid	56.17	58.38
CDX94392	Canola	plastid	54.16	55.99
CDX92740	Canola	plastid	54.16	54.16
CDY42769	Canola	nucleus	31.49	53.65
VIT_11s0103g00760.t01	Wine grape	plastid	50.63	48.2
KRH02778	Soybean	nucleus, plastid	47.36	47.24
KRH19100	Soybean	nucleus	46.1	45.86
PGSC0003DMT400059170	Potato	plastid	47.1	43.29
Solyc07g008540.2.1	Tomato	nucleus, plastid	46.85	43.06
GSMUA_Achr6P01780_001	Banana	nucleus	40.55	39.27
GSMUA_Achr7P19660_001	Banana	mitochondrion	40.55	36.34
GSMUA_Achr10P...	Banana	nucleus	28.97	35.71
KRH37334	Soybean	nucleus, plastid	33.0	35.03
CDX77359	Canola	nucleus	13.6	33.75
CDX70561	Canola	nucleus	12.09	31.79
KRH12328	Soybean	plastid	31.49	31.65
EES04516	Sorghum	plastid	38.54	31.48
HORVU6Hr1G021460.2	Barley	plastid	37.28	30.2
Os02t0148000-01	Rice	plastid	35.52	29.94
TraesCS6A01G118000.1	Wheat	plastid	37.03	29.88
TraesCS6B01G146200.2	Wheat	plastid	37.03	29.76
TraesCS6D01G108000.1	Wheat	plastid	37.03	29.76
Zm00001d053880_P001	Maize	plastid	35.26	29.6
CDY15597	Canola	nucleus	14.36	29.08
Zm00001d015268_P001	Maize	plastid	34.26	28.81
CDY66177	Canola	nucleus	14.11	28.43
CDY06672	Canola	nucleus	14.36	28.22
Os06t0699600-01	Rice	plastid	33.0	28.11
CDY10244	Canola	nucleus	14.11	27.72
TraesCS7D01G414400.2	Wheat	plastid	31.49	27.35
TraesCS7A01G422200.1	Wheat	nucleus, plastid	31.23	27.07
HORVU7Hr1G097630.2	Barley	cytosol, nucleus	19.9	26.78
TraesCS7B01G322600.1	Wheat	plastid	30.73	26.7
Zm00001d014664_P001	Maize	plastid	28.72	26.21
CDY07383	Canola	cytosol	15.11	26.09
KXG20763	Sorghum	plastid	29.47	25.77
CDY04230	Canola	nucleus	13.85	23.91
CDY03851	Canola	nucleus	20.65	22.04
CDY53119	Canola	nucleus	20.65	21.81
CDY65591	Canola	nucleus	18.89	21.55
CDY67920	Canola	nucleus	18.64	21.26
CDY51133	Canola	nucleus	20.15	21.22
CDX85600	Canola	nucleus	16.12	20.13
CDX69586	Canola	nucleus, plastid	16.62	20.0
CDX91067	Canola	nucleus	16.12	19.81
CDY24402	Canola	nucleus	18.14	19.51
CDY09849	Canola	nucleus	16.12	19.34
CDX78575	Canola	nucleus	14.61	19.27
CDX81527	Canola	nucleus	19.4	19.2
CDY44890	Canola	nucleus	19.4	19.2
CDY66242	Canola	nucleus	15.11	19.11
CDY36106	Canola	nucleus	15.37	15.89
CDY07382	Canola	nucleus	0.76	6.82
CDY04231	Canola	mitochondrion	0.76	6.82

Protein Annotations

EnsemblPlants:CDY38274	EnsemblPlantsGene:GSBRNA2T00065633001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	PANTHER:PTHR31874
PANTHER:PTHR31874:SF10	PFAM:PF06203	PFscan:PS51017	ProteinID:CDY38274	ProteinID:CDY38274.1	SEG:seg
UniParc:UPI0004EDD72D	UniProt:A0A078HLN8	MapMan:15.5.1.2	:	:	:

Description

BnaA10g11220DBnaA10g11220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLN8]

Coordinates

chrLK032420:+:175021..178293

Molecular Weight (calculated)

44388.3 Da

IEP (calculated)

9.491

GRAVY (calculated)

-0.772

Length

397 amino acids

Sequence
(BLAST)

001: MSACLSSGGG GAAAYSFELE KKKSPPPPPP SSSTTTRATS PSSTISESSN SPLAISTRKP RTPRKRPNQT YNEAAALLST AYPNLFPSSP NNLYSKKKTH
101: PNPHLYGFAA KSPLLSDNDD ASELLLESIE EPDFLFIPTI QARSEYFSEQ KEVNVNLFEF SDEFDAESIL DEETEEGIDS IMGIVESNSG ENRGHLISRL
201: EHMMKMNRKG FKFPLGLGLR SALREHNDAN WCRFHTVDFE QISPRIQSTV KEEKIESKKS KKKKKKKVPA AAAAVKTVQM TETCRDDSEE KSGQLMLKLD
301: YDGVLEAWSE KESPFSDEIL ASEAAGADVN ARLAQIDLFG DSGIREASVL RYKEKRRTRL FSKKIRYQVR KLNADQRPRM KGRFVRRPNA SPPSGQR

Best Arabidopsis Sequence Match ( AT5G57180.2 )
(BLAST)

001: MSACLSSGGG GAAAYSFELE KVKSPPPSSS TTTTRATSPS STISESSNSP LAISTRKPRT QRKRPNQTYN EAATLLSTAY PNIFSSNLSS KQKTHSSSNS
101: HFYGPLLSDN DDASDLLLPY ESIEEPDFLF HPTIQTKTEF FSDQKEVNSG GDCYGGEIEK FDFSDEFDAE SILDEDIEEG IDSIMGTVVE SNSNSGIYES
201: RVPGMINRGG RSSSNRIGKL EQMMMINSWN RSSNGFNFPL GLGLRSALRE NDDTKLWKIH TVDFEQISPR IQTVKTETAI STVDEEKSDG KKVVISGEKS
301: NKKKKKKKMT VTTTLITESK SLEDTEETSL KRTGPLLKLD YDGVLEAWSD KTSPFPDEIQ GSEAVDVNAR LAQIDLFGDS GMREASVLRY KEKRRTRLFS
401: KKIRYQVRKL NADQRPRMKG RFVRRPNEST PSGQR

Arabidopsis Description

CIA2CIA2 [Source:UniProtKB/TrEMBL;Acc:A0A178UDY1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.