Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85600 | Canola | nucleus | 93.81 | 95.28 |
| Bra023461.1-P | Field mustard | cytosol | 44.89 | 94.77 |
| Bra023462.1-P | Field mustard | nucleus | 46.44 | 94.34 |
| CDX70561 | Canola | nucleus | 41.8 | 89.4 |
| CDX69586 | Canola | nucleus, plastid | 78.95 | 77.27 |
| CDY09849 | Canola | nucleus | 78.95 | 77.04 |
| CDX78575 | Canola | nucleus | 70.59 | 75.75 |
| AT5G14370.1 | Thale cress | nucleus | 79.26 | 75.52 |
| VIT_14s0219g00220.t01 | Wine grape | nucleus, plastid | 40.25 | 41.94 |
| GSMUA_Achr11P... | Banana | nucleus | 23.53 | 40.21 |
| HORVU2Hr1G056960.1 | Barley | peroxisome | 11.76 | 36.19 |
| KRH07084 | Soybean | plastid | 36.53 | 33.33 |
| GSMUA_Achr10P... | Banana | nucleus | 29.1 | 32.64 |
| KRG94369 | Soybean | plastid | 34.67 | 31.64 |
| CDY66177 | Canola | nucleus | 19.2 | 31.47 |
| Solyc02g093590.2.1 | Tomato | nucleus | 30.96 | 31.25 |
| CDY15597 | Canola | nucleus | 18.89 | 31.12 |
| CDY06672 | Canola | nucleus | 19.2 | 30.69 |
| PGSC0003DMT400032849 | Potato | nucleus | 30.03 | 30.03 |
| CDX77359 | Canola | nucleus | 14.55 | 29.38 |
| CDY10244 | Canola | nucleus | 17.96 | 28.71 |
| Zm00001d035134_P001 | Maize | plastid | 21.98 | 26.59 |
| Zm00001d049651_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 22.29 | 26.57 |
| TraesCS7D01G311500.1 | Wheat | nucleus | 23.84 | 26.55 |
| KXG24303 | Sorghum | mitochondrion, nucleus | 24.15 | 26.44 |
| TraesCS7B01G215100.1 | Wheat | nucleus | 23.84 | 26.1 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 23.53 | 25.5 |
| CDY42769 | Canola | nucleus | 17.65 | 24.46 |
| CDY07383 | Canola | cytosol | 16.72 | 23.48 |
| CDY04230 | Canola | nucleus | 16.1 | 22.61 |
| Os08t0119700-00 | Rice | plastid | 24.77 | 22.6 |
| HORVU7Hr1G074960.1 | Barley | nucleus | 13.0 | 18.58 |
| CDY66242 | Canola | nucleus | 17.96 | 18.47 |
| CDY42238 | Canola | nucleus | 21.36 | 17.88 |
| CDY47926 | Canola | nucleus | 21.36 | 17.6 |
| CDX89377 | Canola | plastid | 20.43 | 17.28 |
| CDY65591 | Canola | nucleus | 18.58 | 17.24 |
| CDY03851 | Canola | nucleus | 19.81 | 17.2 |
| CDY67920 | Canola | nucleus | 18.27 | 16.95 |
| CDY52734 | Canola | nucleus, plastid | 20.43 | 16.58 |
| CDY53119 | Canola | nucleus | 19.2 | 16.49 |
| CDX81527 | Canola | nucleus | 20.43 | 16.46 |
| CDY44890 | Canola | nucleus | 20.43 | 16.46 |
| CDY51133 | Canola | nucleus | 19.2 | 16.45 |
| CDX94392 | Canola | plastid | 19.5 | 16.41 |
| CDY38274 | Canola | nucleus, plastid | 19.81 | 16.12 |
| CDX92740 | Canola | plastid | 19.2 | 15.62 |
| CDY24402 | Canola | nucleus | 17.34 | 15.18 |
| HORVU7Hr1G074920.1 | Barley | extracellular, mitochondrion | 13.62 | 14.77 |
| CDY36106 | Canola | nucleus | 13.31 | 11.2 |
| CDY04231 | Canola | mitochondrion | 0.62 | 4.55 |
| CDY07382 | Canola | nucleus | 0.62 | 4.55 |
Protein Annotations
| EnsemblPlants:CDX91067 | EnsemblPlantsGene:GSBRNA2T00151839001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:CCT_domain |
| InterPro:IPR010402 | PANTHER:PTHR31874 | PANTHER:PTHR31874:SF18 | PFAM:PF06203 | PFscan:PS51017 | ProteinID:CDX91067 |
| ProteinID:CDX91067.1 | SEG:seg | UniParc:UPI0004EF0F27 | MapMan:35.1 | : | : |
Description
BnaC02g05300D
Coordinates
chrLK031865:+:618873..620775
Molecular Weight (calculated)
36149.5 Da
IEP (calculated)
9.087
GRAVY (calculated)
-0.951
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MCSEPCPVVG EEKQSTRTSK RIKKRKHIAM DDSSPSNLET SRKQIRTKTK KPKFLSLSLK LELNTSHEID ESPVTTTNKK KQSKTRGGAE KKRMETVGEG
101: EKEEDQYDTV AAYLFNSTTD NSTISSIHDL LPSSAEDVDC GGGGRDMSPY DIKERGSTST SSLLRTAMRK GASKEEATAE RWVSYSEVVD EVMSRSGTPR
201: CCGGDGNDGR TSLALKLDYE QIMEAWPDKG TLYVDGEPPQ TVPDLHASAD VVTGGGEAGS LWTVPEMETT ETLWRGHREA SLLRYKEKRQ SRLFSKRIRY
301: QVRKLNAEKR PRVKGRFVKR DDL
101: EKEEDQYDTV AAYLFNSTTD NSTISSIHDL LPSSAEDVDC GGGGRDMSPY DIKERGSTST SSLLRTAMRK GASKEEATAE RWVSYSEVVD EVMSRSGTPR
201: CCGGDGNDGR TSLALKLDYE QIMEAWPDKG TLYVDGEPPQ TVPDLHASAD VVTGGGEAGS LWTVPEMETT ETLWRGHREA SLLRYKEKRQ SRLFSKRIRY
301: QVRKLNAEKR PRVKGRFVKR DDL
001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
Arabidopsis Description
CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.