Factsheet for Solyc02g093590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032849	Potato	nucleus	89.69	88.85
CDX70561	Canola	nucleus	22.81	48.34
Bra023461.1-P	Field mustard	cytosol	22.5	47.06
VIT_14s0219g00220.t01	Wine grape	nucleus, plastid	44.06	45.48
GSMUA_Achr11P...	Banana	nucleus	23.44	39.68
HORVU2Hr1G056960.1	Barley	peroxisome	12.5	38.1
GSMUA_Achr10P...	Banana	nucleus	32.5	36.11
KRH07084	Soybean	plastid	37.81	34.18
KRG94369	Soybean	plastid	36.25	32.77
AT5G14370.1	Thale cress	nucleus	34.38	32.45
CDX69586	Canola	nucleus, plastid	33.12	32.12
CDY09849	Canola	nucleus	33.12	32.02
CDX85600	Canola	nucleus	31.56	31.76
CDX91067	Canola	nucleus	31.25	30.96
CDX78575	Canola	nucleus	28.75	30.56
Bra006252.1-P	Field mustard	nucleus	28.75	30.56
TraesCS7D01G311500.1	Wheat	nucleus	27.19	30.0
TraesCS7B01G215100.1	Wheat	nucleus	26.88	29.15
TraesCS7A01G314300.1	Wheat	nucleus	26.88	28.86
KXG24303	Sorghum	mitochondrion, nucleus	26.56	28.81
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	23.44	27.68
Zm00001d035134_P001	Maize	plastid	22.81	27.34
Os08t0119700-00	Rice	plastid	26.56	24.01
HORVU7Hr1G074960.1	Barley	nucleus	15.0	21.24
Bra008763.1-P	Field mustard	nucleus, plastid	31.56	18.88
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	17.19	18.46
Solyc07g008540.2.1	Tomato	nucleus, plastid	22.19	16.44
Solyc03g119540.2.1	Tomato	nucleus	20.62	16.18
Solyc04g007210.2.1	Tomato	nucleus	21.25	15.89
Solyc05g009310.2.1	Tomato	nucleus	21.25	15.56
Bra023462.1-P	Field mustard	nucleus	6.25	12.58

Protein Annotations

EnsemblPlants:Solyc02g093590.2.1	EnsemblPlantsGene:Solyc02g093590.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402	PANTHER:PTHR31874
PANTHER:PTHR31874:SF18	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI00027686EC	UniProt:K4BDF5
MapMan:15.5.1.2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:54398593..54401927

Molecular Weight (calculated)

36680.8 Da

IEP (calculated)

7.219

GRAVY (calculated)

-0.954

Length

320 amino acids

Sequence
(BLAST)

001: MHMSDAGCRS KNGKSKSRNK VKRRKPKFLS LSVELSEKKP QKSDDRMVSS SNGSTHDHQQ LNLFPLHPEN LLDDKDSTST AQDDNVALFF AGAENSATTL
101: NEVLVSSKDE IDSNISTSVP NYMAVSSSEA SLTFADTYRG QEGELVRTAL RNKERENREE EKWVVYSDVV DLDQHSESTR KDEEVSSCPW NKRQQQLSLK
201: LDYDEILNAW SDKGPLYLQS QSPQIVPDIH DDFLAFDMPF SINGQLMSSS SVVHRVPEVI GNEQREVEDE EMKAGRREAS VMRYKEKRQN RLFSKTIRYQ
301: VRKLNAEKRP RVKGRFVKRD

Best Arabidopsis Sequence Match ( AT5G14370.1 )
(BLAST)

001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS

Arabidopsis Description

CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.