Factsheet for VIT_14s0219g00220.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70561	Canola	nucleus	26.13	53.64
VIT_06s0004g07210.t01	Wine grape	nucleus	17.42	53.47
Bra023461.1-P	Field mustard	cytosol	26.13	52.94
Solyc02g093590.2.1	Tomato	nucleus	45.48	44.06
PGSC0003DMT400032849	Potato	nucleus	45.48	43.65
KRH07084	Soybean	plastid	48.06	42.09
CDX85600	Canola	nucleus	42.9	41.82
AT5G14370.1	Thale cress	nucleus	45.16	41.3
KRG94369	Soybean	plastid	46.45	40.68
CDX91067	Canola	nucleus	41.94	40.25
HORVU2Hr1G056960.1	Barley	peroxisome	13.55	40.0
CDX69586	Canola	nucleus, plastid	42.26	39.7
GSMUA_Achr11P...	Banana	nucleus	24.19	39.68
CDY09849	Canola	nucleus	41.94	39.27
GSMUA_Achr10P...	Banana	nucleus	35.48	38.19
CDX78575	Canola	nucleus	36.77	37.87
Bra006252.1-P	Field mustard	nucleus	36.77	37.87
TraesCS7D01G311500.1	Wheat	nucleus	28.39	30.34
TraesCS7B01G215100.1	Wheat	nucleus	28.71	30.17
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	26.13	29.89
KXG24303	Sorghum	mitochondrion, nucleus	28.06	29.49
TraesCS7A01G314300.1	Wheat	nucleus	28.06	29.19
Zm00001d035134_P001	Maize	plastid	24.19	28.09
Bra023462.1-P	Field mustard	nucleus	14.19	27.67
Os08t0119700-00	Rice	plastid	29.35	25.71
Bra008763.1-P	Field mustard	nucleus, plastid	41.29	23.93
HORVU7Hr1G074960.1	Barley	nucleus	15.81	21.68
VIT_11s0103g00760.t01	Wine grape	plastid	25.16	18.7
VIT_01s0011g03520.t01	Wine grape	nucleus	25.81	18.52
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	17.42	18.12

Protein Annotations

EntrezGene:100254358	wikigene:100254358	MapMan:15.5.1.2	EMBL:AM424169	ProteinID:CAN75558	ProteinID:CAN75558.1
ProteinID:CCB44552	ProteinID:CCB44552.1	InterPro:CCT_domain	UniProt:F6GX66	EMBL:FN594962	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:IPR010402	EntrezGene:LOC100254358	wikigene:LOC100254358	PFAM:PF06203	PFscan:PS51017	PANTHER:PTHR31874
PANTHER:PTHR31874:SF18	UniParc:UPI0001984B12	ArrayExpress:VIT_14s0219g00220	EnsemblPlantsGene:VIT_14s0219g00220	EnsemblPlants:VIT_14s0219g00220.t01	unigene:Vvi.50
RefSeq:XP_002268929	RefSeq:XP_002268929.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr14:-:26474559..26476320

Molecular Weight (calculated)

34528.6 Da

IEP (calculated)

9.207

GRAVY (calculated)

-0.836

Length

310 amino acids

Sequence
(BLAST)

001: MCNNKNSPPT IPDLEGSSMI SKESSTVVSL KPARKIRTKT RKPKFLSLRL ELSSDNSQES GETMTRNHHH QLNLFPLHPE NLVEDKDMHD ENMAYFFAAS
101: DGGANLNGLL GGDTGAAVPS GDSLSPSLTY AYGGQDSEEG ASTLVRAALR NRERDASEEK WVSYSEVVEK KEEEVTSCAA DLWYKNHTQR LSLKLDYQEI
201: LNAWSGKGPL FIEGESPQTV PDLAHDAANA MGDGWSGVWK VPEMGGSRSS MKMEEVGGGE GSKKGQRQAS VLRYKEKRQS RLFSKRIRYE VRKLNAEKRP
301: RMKGRFVKRS

Best Arabidopsis Sequence Match ( AT5G14370.1 )
(BLAST)

001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS

Arabidopsis Description

CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.