Factsheet for Bra006252.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78575	Canola	nucleus	97.67	97.67
Bra023461.1-P	Field mustard	cytosol	42.19	83.01
AT5G14370.1	Thale cress	nucleus	78.07	69.32
Bra023462.1-P	Field mustard	nucleus	28.24	53.46
Bra008763.1-P	Field mustard	nucleus, plastid	75.42	42.43
GSMUA_Achr11P...	Banana	nucleus	24.25	38.62
VIT_14s0219g00220.t01	Wine grape	nucleus, plastid	37.87	36.77
HORVU2Hr1G056960.1	Barley	peroxisome	11.96	34.29
KRH07084	Soybean	plastid	34.88	29.66
GSMUA_Achr10P...	Banana	nucleus	28.24	29.51
Solyc02g093590.2.1	Tomato	nucleus	30.56	28.75
Bra015548.1-P	Field mustard	nucleus	19.27	28.57
KRG94369	Soybean	plastid	33.22	28.25
PGSC0003DMT400032849	Potato	nucleus	29.57	27.55
Zm00001d049651_P001	Maize	mitochondrion, nucleus, peroxisome, plastid	21.59	23.99
TraesCS7D01G311500.1	Wheat	nucleus	22.26	23.1
Zm00001d035134_P001	Maize	plastid	20.27	22.85
KXG24303	Sorghum	mitochondrion, nucleus	22.26	22.71
TraesCS7B01G215100.1	Wheat	nucleus	21.93	22.37
TraesCS7A01G314300.1	Wheat	nucleus	21.93	22.15
Os08t0119700-00	Rice	plastid	22.26	18.93
Bra032273.1-P	Field mustard	nucleus	18.6	17.83
HORVU7Hr1G074960.1	Barley	nucleus	12.62	16.81
Bra012475.1-P	Field mustard	nucleus	22.26	16.42
Bra019134.1-P	Field mustard	plastid	20.6	16.19
Bra013939.1-P	Field mustard	plastid	20.27	15.97
Bra033925.1-P	Field mustard	nucleus	20.93	15.71
Bra020461.1-P	Field mustard	nucleus	20.27	15.48
Bra024750.1-P	Field mustard	nucleus	21.26	15.46
HORVU7Hr1G074920.1	Barley	extracellular, mitochondrion	13.95	14.09
Bra002752.1-P	Field mustard	nucleus, plastid	17.28	13.23
Bra004035.1-P	Field mustard	nucleus	19.27	12.24
Bra010994.1-P	Field mustard	nucleus	15.28	11.3

Protein Annotations

EnsemblPlants:Bra006252.1	EnsemblPlants:Bra006252.1-P	EnsemblPlantsGene:Bra006252	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:CCT_domain	InterPro:IPR010402
PANTHER:PTHR31874	PANTHER:PTHR31874:SF18	PFAM:PF06203	PFscan:PS51017	SEG:seg	UniParc:UPI000253FB4B
UniProt:M4CPW3	MapMan:35.1	:	:	:	:

Description

AT5G14370 (E=9e-091) | LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: CIL (TAIR:AT4G25990.1); Has 1815 Blast hits to 1506 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa - 291; Fungi - 53; Plants - 1145; Viruses - 0; Other Eukaryotes - 318 (source: NCBI BLink).

Coordinates

chrA03:-:2698486..2699873

Molecular Weight (calculated)

33964.6 Da

IEP (calculated)

9.812

GRAVY (calculated)

-1.097

Length

301 amino acids

Sequence
(BLAST)

001: MCDKLSPVGD EKQSTRTSNR IKKRKHMEST SIYKSPSNIQ TSPSNIETSR KHRKNNKKLK QSKTKGADAT PSKEKKRAET VGGEKEEEHY DTVAAYLFNS
101: ANDSTISSIL PYSSSAELDC DGGRNHSPYD RQDHGSSSSS SLLRTAMKKG ASKEGETTEE RWVSYSEVVD EVVSPSGTPR CCGGDGNEGR SSLALKLDYE
201: QIMEAWLDKG TLYVDGEPPQ TVPDLHTSAD VFTSGGEALW AVPKMETMER LWRGHREASL LRYKEKRQSR FFSKRIRYQV RKLNAEKRPR NKGRFVKRDD
301: L

Best Arabidopsis Sequence Match ( AT5G14370.1 )
(BLAST)

001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS

Arabidopsis Description

CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.