Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 47.22 | 71.96 |
| CDX70561 | Canola | nucleus | 24.65 | 47.02 |
| Bra023461.1-P | Field mustard | cytosol | 23.26 | 43.79 |
| HORVU2Hr1G056960.1 | Barley | peroxisome | 13.89 | 38.1 |
| VIT_14s0219g00220.t01 | Wine grape | nucleus, plastid | 38.19 | 35.48 |
| TraesCS7D01G311500.1 | Wheat | nucleus | 32.99 | 32.76 |
| Solyc02g093590.2.1 | Tomato | nucleus | 36.11 | 32.5 |
| Zm00001d049651_P001 | Maize | mitochondrion, nucleus, peroxisome, plastid | 30.21 | 32.1 |
| TraesCS7A01G314300.1 | Wheat | nucleus | 32.99 | 31.88 |
| TraesCS7B01G215100.1 | Wheat | nucleus | 32.29 | 31.53 |
| Zm00001d035134_P001 | Maize | plastid | 29.17 | 31.46 |
| PGSC0003DMT400032849 | Potato | nucleus | 35.07 | 31.27 |
| KXG24303 | Sorghum | mitochondrion, nucleus | 31.6 | 30.85 |
| CDX85600 | Canola | nucleus | 32.64 | 29.56 |
| AT5G14370.1 | Thale cress | nucleus | 34.38 | 29.2 |
| CDX91067 | Canola | nucleus | 32.64 | 29.1 |
| CDY09849 | Canola | nucleus | 32.99 | 28.7 |
| CDX69586 | Canola | nucleus, plastid | 32.64 | 28.48 |
| KRH07084 | Soybean | plastid | 34.72 | 28.25 |
| Bra006252.1-P | Field mustard | nucleus | 29.51 | 28.24 |
| CDX78575 | Canola | nucleus | 29.51 | 28.24 |
| KRG94369 | Soybean | plastid | 32.99 | 26.84 |
| HORVU7Hr1G074960.1 | Barley | nucleus | 20.49 | 26.11 |
| Os08t0119700-00 | Rice | plastid | 31.6 | 25.71 |
| HORVU7Hr1G074920.1 | Barley | extracellular, mitochondrion | 21.53 | 20.81 |
| GSMUA_Achr10P... | Banana | nucleus | 22.22 | 18.23 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 20.83 | 18.02 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 22.57 | 17.71 |
| Bra008763.1-P | Field mustard | nucleus, plastid | 32.64 | 17.57 |
| GSMUA_Achr10P... | Banana | nucleus | 23.26 | 17.54 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 22.92 | 17.41 |
| GSMUA_Achr6P01780_001 | Banana | nucleus | 19.79 | 13.9 |
| GSMUA_Achr7P19660_001 | Banana | mitochondrion | 21.18 | 13.77 |
| Bra023462.1-P | Field mustard | nucleus | 6.6 | 11.95 |
| GSMUA_Achr10P... | Banana | nucleus | 10.07 | 9.01 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P03960_001 | EnsemblPlants:GSMUA_Achr10T03960_001 | EnsemblPlantsGene:GSMUA_Achr10G03960_001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:CCT_domain | InterPro:IPR010402 |
| PANTHER:PTHR31874 | PANTHER:PTHR31874:SF18 | PFAM:PF06203 | PFscan:PS51017 | SEG:seg | UniParc:UPI0002968226 |
| UniProt:M0RF73 | MapMan:15.5.1.2 | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_219.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G03960_001]
Coordinates
chr10:+:13481207..13484406
Molecular Weight (calculated)
31786.1 Da
IEP (calculated)
7.222
GRAVY (calculated)
-0.870
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSSRRTRSK ARKPKYVSLR RHLSSPPPPR PPPETADPSD MSSAAAPDDC VCRRHQLDLP PLHPEHLDRE PNVACLLDDR GGGGEPTLAA LLGVDVSSSS
101: GSPSPASLAS PSVNWEEDQG GDGDGLARRA LRGRERWAYC RASSVPASSS EEEVASSAIG GDSGVDLWRC ATPQALALKL DYEEILAAWS DRGPLYMDGE
201: GPQVVPQLHH HAADPYDAGA FPVNRTAEGS GLSREARVMR YKEKRRNRLF AKRIRYEVRK LNAEKRPRLK GRFVRRKDDD EEEEEDHL
101: GSPSPASLAS PSVNWEEDQG GDGDGLARRA LRGRERWAYC RASSVPASSS EEEVASSAIG GDSGVDLWRC ATPQALALKL DYEEILAAWS DRGPLYMDGE
201: GPQVVPQLHH HAADPYDAGA FPVNRTAEGS GLSREARVMR YKEKRRNRLF AKRIRYEVRK LNAEKRPRLK GRFVRRKDDD EEEEEDHL
001: MCSNKASPVV GEEKQSTRSS KRIKKRKNRE ATTTMEDKSS SNLDASRKIR TKTKKPKFLS LKLELNTSHE INENPRSKKS KKKNNNKKQS KKKEPDTTPF
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
101: KEKKRAETTT TLGGGEKEEE QYDTVAAYLF NSATDSTISS IHDLLPSSAA TDVDCGGERN NLSPYDRQDH GSSSSSLLRT AMRKGASEEE ETTEERWVSY
201: SEVVEEVMSR SGTPRCCGGG DGNDGRPSLA LKLDYEQIME AWSDKGTLYV DGEPPQTVPD LHASADGFND GGEAGNLWAV PEMETTERLW RGHREASLLR
301: YKEKRQNRLF SKRIRYQVRK LNAEKRPRVK GRFVKREDS
Arabidopsis Description
CCT motif family protein [Source:UniProtKB/TrEMBL;Acc:Q949T9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.