Factsheet for GSMUA_Achr7P12560_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 4
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P06040_001
GSMUA_Achr3P10380_001
GSMUA_Achr5P23980_001
GSMUA_Achr9P18270_001
GSMUA_Achr9P28200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G68520.1	GSMUA_Achr3P06040_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr3P10380_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr5P23980_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P18270_001	AT1G60010.1	21798944
AT1G68520.1	GSMUA_Achr9P28200_001	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04231	Canola	mitochondrion	7.51	56.82
GSMUA_Achr10P...	Banana	nucleus	48.35	42.15
CDX77359	Canola	nucleus	19.82	41.25
GSMUA_Achr7P18710_001	Banana	plastid	46.85	41.16
KRH13468	Soybean	cytosol	12.01	40.4
GSMUA_Achr4P30670_001	Banana	nucleus	42.94	38.96
GSMUA_Achr10P...	Banana	nucleus	38.44	36.47
CDY65591	Canola	nucleus	37.84	36.21
CDY03851	Canola	nucleus	40.24	36.02
VIT_01s0011g03520.t01	Wine grape	nucleus	46.25	35.65
CDY67920	Canola	nucleus	37.24	35.63
CDY51133	Canola	nucleus	38.44	33.95
CDY53119	Canola	nucleus	38.14	33.78
KRG90815	Soybean	nucleus	42.34	33.73
Solyc04g007210.2.1	Tomato	nucleus	43.24	33.64
AT1G68520.1	Thale cress	nucleus	40.84	33.5
CDY44890	Canola	nucleus	40.24	33.42
Bra033925.1-P	Field mustard	nucleus	40.24	33.42
KRH35955	Soybean	nucleus	42.04	33.41
CDX81527	Canola	nucleus	39.94	33.17
CDY04230	Canola	nucleus	22.52	32.61
Bra012475.1-P	Field mustard	nucleus	39.94	32.6
CDY24402	Canola	nucleus	36.04	32.52
AT1G25440.1	Thale cress	nucleus	40.54	32.37
Solyc05g009310.2.1	Tomato	nucleus	41.74	31.81
Bra024750.1-P	Field mustard	nucleus	39.34	31.64
PGSC0003DMT400037755	Potato	nucleus	42.34	31.54
Bra004035.1-P	Field mustard	nucleus	40.54	28.48
CDY36106	Canola	nucleus	30.63	26.56
GSMUA_Achr11P...	Banana	nucleus	15.02	26.45
Bra010994.1-P	Field mustard	nucleus	30.93	25.31
PGSC0003DMT400020030	Potato	nucleus	40.24	23.8
GSMUA_Achr10P...	Banana	nucleus	18.02	20.83
GSMUA_Achr6P01780_001	Banana	nucleus	19.22	15.61
GSMUA_Achr7P19660_001	Banana	mitochondrion	20.42	15.35
GSMUA_Achr10P...	Banana	nucleus	9.01	9.32

Protein Annotations

MapMan:15.5.1.2	InterPro:CCT_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr7G12560_001	EnsemblPlants:GSMUA_Achr7P12560_001
EnsemblPlants:GSMUA_Achr7T12560_001	InterPro:IPR000315	InterPro:IPR010402	UniProt:M0TGZ4	PFAM:PF06203	PFscan:PS50119
PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF21	SMART:SM00336	UniParc:UPI000295ED61	InterPro:Znf_B-box
SEG:seg	:	:	:	:	:

Description

Putative Zinc finger protein CONSTANS-LIKE 8 [Source:GMGC_GENE;Acc:GSMUA_Achr7G12560_001]

Coordinates

chr7:+:10040786..10043047

Molecular Weight (calculated)

37579.3 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.734

Length

333 amino acids

Sequence
(BLAST)

001: MRADAGFYIG AIFLIGNSPT LDLFQFSAAA MDDSEKQQRP SPDAVGGKAA RACYGCLRHR ARWYCTAHHA FLCQICDSSV HSANPLVRRH QRVRLTTTSL
101: VGEPGESSPS WLEGFERKAR TSRPQHRTNM MAAGDLPEQL VDASVDEDDD GEQEEELSYC VPIRNPLFAS FCSPPPPLDN SNATSSVAEN TGFSIEDDAR
201: HVKMEQPDPK LRLDYESIIM AWSSQGSSPW TDGERPQINV DNCWPDYMDM WTGSGMETER ACHGGEIGVY LGDGKREARV TRYREKRRTR LFSKKIRYEV
301: RKLNAEKRPR MKGRFVKRTP ALASLTRKKP VSR

Best Arabidopsis Sequence Match ( AT1G49130.1 )
(BLAST)

001: MTSHQNIKIS EKIMISKYQE DVKQPRACEL CLNKHAVWYC ASDDAFLCHV CDESVHSANH VATKHERVCL RTNEISNDVR GGTTLTSVWH SGFRRKARTP
101: RSRYEKKPQQ KIDDERRRED PRVPEIGGEV MFFIPEANDD DMTSLVPEFE GFTEMGFFLS NHNGTEETTK QFNFEEEADT MEDLYYNGEE EDKTDGAEAC
201: PGQYLMSCKK DYDNVITVSE KTEEIEDCYE NNARHRLNYE NVIAAWDKQE SPRDVKNNTS SFQLVPPGIE EKRVRSEREA RVWRYRDKRK NRLFEKKIRY
301: EVRKVNADKR PRMKGRFVRR SLAIDS

Arabidopsis Description

B-box type zinc finger protein with CCT domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I1N0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.