Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G68520.1 | KRG99257 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | KRH45741 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | KRH69484 | AT1G60010.1 | 21798944 |
| AT1G68520.1 | KRH74672 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH35955 | Soybean | nucleus | 89.95 | 89.74 |
| CDY04231 | Canola | mitochondrion | 7.89 | 75.0 |
| VIT_01s0011g03520.t01 | Wine grape | nucleus | 58.61 | 56.71 |
| KRH13468 | Soybean | cytosol | 11.72 | 49.49 |
| CDY65591 | Canola | nucleus | 39.23 | 47.13 |
| CDY67920 | Canola | nucleus | 39.0 | 46.84 |
| CDY03851 | Canola | nucleus | 41.63 | 46.77 |
| GSMUA_Achr10P... | Banana | nucleus | 38.52 | 45.87 |
| KRH60334 | Soybean | nucleus | 39.95 | 45.75 |
| AT1G68520.1 | Thale cress | nucleus | 44.02 | 45.32 |
| GSMUA_Achr7P18710_001 | Banana | plastid | 40.91 | 45.12 |
| CDX77359 | Canola | nucleus | 17.22 | 45.0 |
| CDY53119 | Canola | nucleus | 40.43 | 44.95 |
| CDY51133 | Canola | nucleus | 40.43 | 44.83 |
| KRH41630 | Soybean | nucleus | 39.71 | 44.74 |
| Bra012475.1-P | Field mustard | nucleus | 43.54 | 44.61 |
| Bra024750.1-P | Field mustard | nucleus | 44.02 | 44.44 |
| CDX81527 | Canola | nucleus | 42.58 | 44.39 |
| AT1G25440.1 | Thale cress | nucleus | 44.26 | 44.36 |
| GSMUA_Achr10P... | Banana | nucleus | 40.43 | 44.24 |
| CDY44890 | Canola | nucleus | 42.34 | 44.14 |
| Bra033925.1-P | Field mustard | nucleus | 42.11 | 43.89 |
| GSMUA_Achr4P30670_001 | Banana | nucleus | 38.04 | 43.32 |
| KRH48479 | Soybean | nucleus | 43.78 | 42.86 |
| GSMUA_Achr7P12560_001 | Banana | nucleus | 33.73 | 42.34 |
| CDY04230 | Canola | nucleus | 23.21 | 42.17 |
| CDY24402 | Canola | nucleus | 36.84 | 41.73 |
| TraesCS7D01G209000.1 | Wheat | nucleus | 42.58 | 41.2 |
| TraesCS7A01G206200.1 | Wheat | nucleus | 42.34 | 40.97 |
| TraesCS7B01G113400.1 | Wheat | nucleus | 42.11 | 40.74 |
| Os03t0711100-01 | Rice | plastid | 40.43 | 40.14 |
| Zm00001d037327_P001 | Maize | mitochondrion, nucleus | 42.34 | 39.16 |
| TraesCS4A01G268500.1 | Wheat | nucleus, plastid | 38.28 | 39.02 |
| TraesCS6B01G323400.1 | Wheat | nucleus | 39.71 | 38.78 |
| HORVU4Hr1G007420.1 | Barley | nucleus, plastid | 38.04 | 38.78 |
| TraesCS4B01G045700.1 | Wheat | nucleus, plastid | 38.04 | 38.69 |
| TraesCS4D01G046200.1 | Wheat | nucleus, plastid | 37.8 | 38.54 |
| TraesCS6A01G293200.1 | Wheat | nucleus | 39.0 | 38.26 |
| Os02t0731700-02 | Rice | nucleus | 41.15 | 38.05 |
| TraesCS6D01G274100.1 | Wheat | nucleus | 39.47 | 38.02 |
| Bra004035.1-P | Field mustard | nucleus | 42.82 | 37.76 |
| Zm00001d045661_P001 | Maize | nucleus | 41.15 | 37.72 |
| Zm00001d013443_P001 | Maize | plastid | 37.08 | 37.53 |
| EER88191 | Sorghum | nucleus, plastid | 42.11 | 37.13 |
| KRH39195 | Soybean | nucleus | 42.11 | 36.67 |
| Os06t0264200-00 | Rice | plastid | 42.11 | 36.59 |
| EER93585 | Sorghum | plastid | 36.6 | 36.43 |
| Zm00001d017939_P001 | Maize | nucleus | 40.19 | 36.13 |
| EES05581 | Sorghum | nucleus, plastid | 41.87 | 35.86 |
| CDY36106 | Canola | nucleus | 32.3 | 35.16 |
| Bra010994.1-P | Field mustard | nucleus | 33.73 | 34.64 |
| HORVU6Hr1G073170.1 | Barley | nucleus | 39.95 | 33.53 |
| Zm00001d033719_P001 | Maize | plastid | 36.12 | 32.06 |
| KRH17099 | Soybean | nucleus | 14.11 | 26.82 |
| KRH72745 | Soybean | nucleus | 12.92 | 23.48 |
| KRH07084 | Soybean | plastid | 17.94 | 21.19 |
| KRH02778 | Soybean | nucleus, plastid | 18.66 | 19.6 |
| KRG94369 | Soybean | plastid | 16.27 | 19.21 |
| KRH19100 | Soybean | nucleus | 18.18 | 19.05 |
| KRH37334 | Soybean | nucleus, plastid | 14.35 | 16.04 |
| KRH12328 | Soybean | plastid | 12.92 | 13.67 |
Protein Annotations
| EntrezGene:100817528 | MapMan:15.5.1.2 | EMBL:ACUP02012643 | InterPro:CCT_domain | EnsemblPlantsGene:GLYMA_20G115600 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0008270 | UniProt:I1NFI8 | InterPro:IPR000315 | InterPro:IPR010402 | EnsemblPlants:KRG90815 | ProteinID:KRG90815 |
| ProteinID:KRG90815.1 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 |
| PANTHER:PTHR31874:SF21 | SMART:SM00336 | UniParc:UPI0001BA87B7 | InterPro:Znf_B-box | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr20:+:35745447..35747661
Molecular Weight (calculated)
46750.6 Da
IEP (calculated)
5.676
GRAVY (calculated)
-0.740
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSATKNAAN AVGGKTARAC DGCITKRARW YCAADDAFLC QACDSSVHLA NPLARRHERV RLKTASYKST DERRQPPTWH TKKPRTPRHG KHSRNNNPFH
101: LVPEEGSEEA NSHDENEEQL VYRVPIVDPF VAELCGTNSS PSSVTSTDQG VVAAAAAASA EVEYKGIQSN DFCSNSNEIE NLHGMLPSDA ELAEFAADVE
201: SFLGRGLENK CVGMEELGLV DTKEEECSVG SGKVKVEEEE SPLMEMDMGR DDQSFELSFD YETCEEVKEM KVSDLELGNE LGEMKENDDD EVKRKKVSLQ
301: LDYEAIIIAW ASQKSPWTTA DKQNLDPDEC WHQCMGSCGT AFHHPYGELG GFGIHSVIVD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG
401: RFVKRASFAP PTFPLLNK
101: LVPEEGSEEA NSHDENEEQL VYRVPIVDPF VAELCGTNSS PSSVTSTDQG VVAAAAAASA EVEYKGIQSN DFCSNSNEIE NLHGMLPSDA ELAEFAADVE
201: SFLGRGLENK CVGMEELGLV DTKEEECSVG SGKVKVEEEE SPLMEMDMGR DDQSFELSFD YETCEEVKEM KVSDLELGNE LGEMKENDDD EVKRKKVSLQ
301: LDYEAIIIAW ASQKSPWTTA DKQNLDPDEC WHQCMGSCGT AFHHPYGELG GFGIHSVIVD GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG
401: RFVKRASFAP PTFPLLNK
001: MMKSLANAVG AKTARACDSC VKRRARWYCA ADDAFLCQSC DSLVHSANPL ARRHERVRLK TASPAVVKHS NHSSASPPHE VATWHHGFTR KARTPRGSGK
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
101: KNNSSIFHDL VPDISIEDQT DNYELEEQLI CQVPVLDPLV SEQFLNDVVE PKIEFPMIRS GLMIEEEEDN AESCLNGFFP TDMELEEFAA DVETLLGRGL
201: DTESYAMEEL GLSNSEMFKI EKDEIEEEVE EIKAMSMDIF DDDRKDVDGT VPFELSFDYE SSHKTSEEEV MKNVESSGEC VVKVKEEEHK NVLMLRLNYD
301: SVISTWGGQG PPWSSGEPPE RDMDISGWPA FSMVENGGES THQKQYVGGC LPSSGFGDGG REARVSRYRE KRRTRLFSKK IRYEVRKLNA EKRPRMKGRF
401: VKRASLAAAA SPLGVNY
Arabidopsis Description
COL16Zinc finger protein CONSTANS-LIKE 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWD0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.