CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG99257
KRH45741
KRH69484
KRH74672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73870.1	KRG99257	AT1G60010.1	21798944
AT1G73870.1	KRH45741	AT1G60010.1	21798944
AT1G73870.1	KRH69484	AT1G60010.1	21798944
AT1G73870.1	KRH74672	AT1G60010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60334	Soybean	nucleus	92.18	93.7
KRH13468	Soybean	cytosol	21.29	79.8
KRH48479	Soybean	nucleus	62.53	54.33
KRH39195	Soybean	nucleus	61.19	47.29
PGSC0003DMT400014362	Potato	nucleus	49.06	45.39
Solyc03g119540.2.1	Tomato	nucleus	47.98	43.63
KRH35955	Soybean	nucleus	46.36	41.05
KRG90815	Soybean	nucleus	44.74	39.71
AT1G73870.1	Thale cress	nucleus	38.27	36.22
KRH17099	Soybean	nucleus	17.25	29.09
KRH72745	Soybean	nucleus	16.17	26.09
KRH19100	Soybean	nucleus	21.29	19.8
KRH02778	Soybean	nucleus, plastid	21.02	19.6
KRH07084	Soybean	plastid	18.6	19.49
KRG94369	Soybean	plastid	17.52	18.36
KRH37334	Soybean	nucleus, plastid	18.33	18.18
KRH12328	Soybean	plastid	17.25	16.2

Protein Annotations

MapMan:15.5.1.2	EMBL:ACUP02004776	InterPro:CCT_domain	EnsemblPlantsGene:GLYMA_08G041100	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008270
UniProt:I1KQ52	InterPro:IPR000315	InterPro:IPR010402	EnsemblPlants:KRH41630	ProteinID:KRH41630	ProteinID:KRH41630.1
PFAM:PF00643	PFAM:PF06203	PFscan:PS50119	PFscan:PS51017	PANTHER:PTHR31874	PANTHER:PTHR31874:SF19
SMART:SM00336	UniParc:UPI00023386BC	InterPro:Znf_B-box	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:3253334..3255499

Molecular Weight (calculated)

41546.4 Da

IEP (calculated)

6.147

GRAVY (calculated)

-0.613

Length

371 amino acids

Sequence
(BLAST)

001: MRDMKDAGAL GGKTARACDS CVSRRARWFC AADDAFLCHA CDTLVHSANQ LASRHERVRL QTASSKATTT TTHAWHSGFT RKARTPRHNN SKHFALQQRL
101: KHEVLFNNTS VLPLVPELGG EEQEPVVVDN DETEEQMLCR VPVFDPFDVR TDDLDSFSDM DFSEFAADVE GRLDKEDDEI SAYVGGGEGV QGVLAKVKGE
201: EEIDGDVACY LESVFDMISD DAFHWNNIES VVSDAREEKG CVVPCDGGVS EQGGIKRDIF LRLNYDEVIT AWSSQGSSPW TTSNPPKFNS DYDFSLGLSG
301: VDGEGRSLRG HLDGGREARV SRYREKRRTR LFAKKIRYEV RKLNAEKRPR MKGRFVKRTC FVGANAFPAY H

Best Arabidopsis Sequence Match ( AT1G73870.1 )
(BLAST)

001: MVVDVESRTA SVTGEKMAAR GCDACMKRSR ASWYCPADDA FLCQSCDASI HSANHLAKRH ERVRLQSSSP TETADKTTSV WYEGFRRKAR TPRSKSCAFE
101: KLLQIESNDP LVPELGGDED DGFFSFSSVE ETEESLNCCV PVFDPFSDML IDDINGFCLV PDEVNNTTTN GELGEVEKAI MDDEGFMGFV PLDMDLEDLT
201: MDVESLLEEE QLCLGFKEPN DVGVIKEENK VGFEINCKDL KRVKDEDEEE EEAKCENGGS KDSDREASND KDRKTSLFLR LDYGAVISAW DNHGSPWKTG
301: IKPECMLGGN TCLPHVVGGY EKLMSSDGSV TRQQGRDGGG SDGEREARVL RYKEKRRTRL FSKKIRYEVR KLNAEQRPRI KGRFVKRTSL LT

Arabidopsis Description

COL7Zinc finger protein CONSTANS-LIKE 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9A9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.