Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc05g006030.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G73870.1 | Solyc05g006030.2.1 | AT1G60010.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014362 | Potato | nucleus | 92.4 | 94.02 |
| KRH60334 | Soybean | nucleus | 43.63 | 48.77 |
| KRH41630 | Soybean | nucleus | 43.63 | 47.98 |
| KRH48479 | Soybean | nucleus | 47.06 | 44.96 |
| Solyc04g007210.2.1 | Tomato | nucleus | 45.34 | 43.22 |
| Solyc05g009310.2.1 | Tomato | nucleus | 44.61 | 41.65 |
| KRH39195 | Soybean | nucleus | 46.08 | 39.17 |
| AT1G73870.1 | Thale cress | nucleus | 35.78 | 37.24 |
| Solyc02g093590.2.1 | Tomato | nucleus | 16.18 | 20.62 |
| Solyc07g008540.2.1 | Tomato | nucleus, plastid | 19.36 | 18.29 |
Protein Annotations
| MapMan:15.5.1.2 | InterPro:CCT_domain | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009641 |
| GO:GO:0009653 | GO:GO:0009987 | GO:GO:0010223 | GO:GO:0045893 | InterPro:IPR000315 | InterPro:IPR010402 |
| UniProt:K4BMA3 | PFAM:PF00643 | PFAM:PF06203 | PFscan:PS50119 | PFscan:PS51017 | PANTHER:PTHR31874 |
| PANTHER:PTHR31874:SF19 | SMART:SM00336 | EnsemblPlantsGene:Solyc03g119540.2 | EnsemblPlants:Solyc03g119540.2.1 | UniParc:UPI00027665D8 | InterPro:Znf_B-box |
Description
No Description!
Coordinates
chr3:-:68118928..68120680
Molecular Weight (calculated)
46695.3 Da
IEP (calculated)
4.922
GRAVY (calculated)
-0.767
Length
408 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTSESKTAN AIGGKTARAC DSCLSKRARW FCPADDAFLC QSCDVSIHSA NQLASRHERV RLETCSNKST ITKLVDKTHQ PSWHQGFTRK ARTPRNGKKA
101: QIRQWKKNEE NRVPEIGSEE NSLDENEFEN EEQLLYRVPI FDPFEAELCN VPDETGSIVD LDILLNTEDA CHDLNLPEFL SSDIELAEFA ADVETLLGGE
201: EEQSTQLLNA DFENNKAIKI EVEDEEMRAV VACHLDPELD MEREALNWNF DEYYEETVEQ KVMAADAAVT EFIASAEEYS GSSTKSDEKN RLFLSLNHEA
301: VISAWPNQSS PWTNGIRPHF NPDDYWPDFF SETSVGNYGG HVRCGDGGRE ARVSRYREKR QNRLFSKKIR YEVRKLNAEK RPRLKGRFIK RSSSLFSVPG
401: FSYMMNKR
101: QIRQWKKNEE NRVPEIGSEE NSLDENEFEN EEQLLYRVPI FDPFEAELCN VPDETGSIVD LDILLNTEDA CHDLNLPEFL SSDIELAEFA ADVETLLGGE
201: EEQSTQLLNA DFENNKAIKI EVEDEEMRAV VACHLDPELD MEREALNWNF DEYYEETVEQ KVMAADAAVT EFIASAEEYS GSSTKSDEKN RLFLSLNHEA
301: VISAWPNQSS PWTNGIRPHF NPDDYWPDFF SETSVGNYGG HVRCGDGGRE ARVSRYREKR QNRLFSKKIR YEVRKLNAEK RPRLKGRFIK RSSSLFSVPG
401: FSYMMNKR
001: MMKSLASAVG GKTARACDSC VKRRARWYCA ADDAFLCHAC DGSVHSANPL ARRHERVRLK SASAGKYRHA SPPHQATWHQ GFTRKARTPR GGKKSHTMVF
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
101: HDLVPEMSTE DQAESYEVEE QLIFEVPVMN SMVEEQCFNQ SLEKQNEFPM MPLSFKSSDE EDDDNAESCL NGLFPTDMEL AQFTADVETL LGGGDREFHS
201: IEELGLGEML KIEKEEVEEE GVVTREVHDQ DEGDETSPFE ISFDYEYTHK TTFDEGEEDE KEDVMKNVME MGVNEMSGGI KEEKKEKALM LRLDYESVIS
301: TWGGQGIPWT ARVPSEIDLD MVCFPTHTMG ESGAEAHHHN HFRGLGLHLG DAGDGGREAR VSRYREKRRT RLFSKKIRYE VRKLNAEKRP RMKGRFVKRS
401: SIGVAH
Arabidopsis Description
COL6Zinc finger protein CONSTANS-LIKE 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG76]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.