Factsheet for Solyc05g006030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g066170.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	Solyc07g066170.2.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040233	Potato	mitochondrion	80.12	80.61
VIT_01s0026g00730.t01	Wine grape	cytosol	62.65	59.43
AT1G60010.1	Thale cress	cytosol	58.43	56.07
KRH69484	Soybean	cytosol	57.23	55.23
KRH74672	Soybean	cytosol	56.63	54.65
KRG99257	Soybean	cytosol	56.63	54.02
KRH45741	Soybean	cytosol	57.23	53.98
CDY30923	Canola	cytosol	55.42	51.98
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	51.81	51.81
CDY07805	Canola	nucleus	51.2	51.2
Bra035410.1-P	Field mustard	cytosol	53.61	50.86
CDY24507	Canola	cytosol	53.61	50.86
Bra027820.1-P	Field mustard	cytosol	54.22	50.85
Bra031717.1-P	Field mustard	cytosol	50.6	50.6
CDY70563	Canola	cytosol	54.22	50.28
CDY69854	Canola	cytosol	53.01	50.0
CDY34887	Canola	cytosol	49.4	49.4
GSMUA_Achr5P23980_001	Banana	cytosol	38.55	46.72
Solyc06g071320.2.1	Tomato	cytosol	42.17	45.16
GSMUA_Achr3P06040_001	Banana	cytosol	46.39	43.75
GSMUA_Achr9P28200_001	Banana	cytosol	42.77	42.52
Zm00001d037251_P001	Maize	cytosol	43.37	39.78
Zm00001d020348_P001	Maize	cytosol	43.98	39.67
KXG30786	Sorghum	cytosol	39.76	39.29
EER96686	Sorghum	cytosol	42.17	39.11
Solyc03g114020.2.1	Tomato	cytosol	43.98	39.04
GSMUA_Achr9P18270_001	Banana	cytosol	42.77	39.01
TraesCS6A01G309500.1	Wheat	cytosol	41.57	38.33
Zm00001d017998_P001	Maize	cytosol	39.76	38.15
KXG19676	Sorghum	cytosol	39.76	37.93
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	42.17	37.84
TraesCS5A01G200100.1	Wheat	cytosol	44.58	37.56
TraesCS5B01G198500.1	Wheat	cytosol	45.18	37.5
TraesCS7D01G194000.1	Wheat	cytosol	36.14	37.04
Os09t0381600-01	Rice	cytosol	46.39	37.02
TraesCS5D01G205700.1	Wheat	cytosol	44.58	37.0
TraesCS5B01G198400.1	Wheat	cytosol	44.58	37.0
OQU80443	Sorghum	cytosol	40.96	36.76
TraesCS7B01G098100.1	Wheat	cytosol	36.75	36.75
TraesCS6D01G288900.1	Wheat	cytosol	39.76	36.67
TraesCS6B01G339300.1	Wheat	cytosol	39.76	36.67
TraesCS7A01G192700.1	Wheat	cytosol	36.75	36.53
Os02t0741700-01	Rice	cytosol	36.14	36.14
Os06t0236300-01	Rice	cytosol	40.96	35.98
HORVU5Hr1G059690.7	Barley	nucleus	43.98	35.96
Zm00001d052277_P001	Maize	cytosol	36.14	35.71
Zm00001d032324_P001	Maize	cytosol	39.76	35.48
Os08t0420700-01	Rice	cytosol, nucleus, plastid	40.36	35.45
Zm00001d044783_P001	Maize	cytosol	36.14	34.48
TraesCS2D01G082500.1	Wheat	cytosol	39.76	33.85
TraesCS2A01G084600.1	Wheat	cytosol	40.36	33.84
HORVU6Hr1G076380.4	Barley	cytosol	34.94	33.72
TraesCS2B01G099400.1	Wheat	cytosol	40.96	33.66
TraesCS2A01G084700.1	Wheat	cytosol	40.36	33.5
Solyc02g092240.2.1	Tomato	cytosol	34.94	33.14
TraesCS2D01G082300.1	Wheat	cytosol	39.76	33.0
HORVU2Hr1G013820.4	Barley	cytosol	39.76	32.67
TraesCS2D01G082600.1	Wheat	cytosol	39.76	32.67
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	39.16	32.66
TraesCS2A01G084400.1	Wheat	cytosol	38.55	32.0
TraesCS2B01G099100.1	Wheat	nucleus	38.55	32.0
TraesCS2B01G099200.1	Wheat	nucleus	37.95	31.5
HORVU7Hr1G039390.1	Barley	cytosol	31.33	31.33
TraesCS2A01G084500.1	Wheat	cytosol	38.55	31.22
HORVU7Hr1G039360.7	Barley	cytosol	31.93	30.46
TraesCS2B01G098900.1	Wheat	nucleus, plastid	27.71	25.41

Protein Annotations

EnsemblPlants:Solyc05g006030.2.1	EnsemblPlantsGene:Solyc05g006030.2	InterPro:DUF4228_plant	PANTHER:PTHR33413	PANTHER:PTHR33413:SF4	PFAM:PF14009
UniParc:UPI00027671C5	UniProt:K4BWD0	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr5:+:773056..774112

Molecular Weight (calculated)

18551.1 Da

IEP (calculated)

10.511

GRAVY (calculated)

-0.781

Length

166 amino acids

Sequence
(BLAST)

001: MGNCQAVDAA ALVIQHPNGK IDRMYWPMTA SEVMKMNPGH YVSLIIPLPI SSDDNSNDKT VRFTRVKLLR QTDTLVLGRA YRLVTTQEVM KVLRAKKHAK
101: MKKNQPELQD NQRSSCEVEA GNSESDKNKA KRHEGNRQRP GTTNLAAASS SKSWRPSLQS ISESNS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.