CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH56393
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G60010.1	KRH56393	AT4G26455.1	21798944
AT1G60010.1	KRH62532	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74672	Soybean	cytosol	92.44	92.44
PGSC0003DMT400040233	Potato	mitochondrion	57.56	60.0
KRG99257	Soybean	cytosol	60.47	59.77
KRH45741	Soybean	cytosol	61.05	59.66
VIT_01s0026g00730.t01	Wine grape	cytosol	59.88	58.86
Solyc05g006030.2.1	Tomato	cytosol	55.23	57.23
AT1G60010.1	Thale cress	cytosol	57.56	57.23
Bra035410.1-P	Field mustard	cytosol	52.91	52.0
CDY24507	Canola	cytosol	52.91	52.0
AT1G10530.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	50.0	51.81
CDY69854	Canola	cytosol	52.91	51.7
Bra027820.1-P	Field mustard	cytosol	52.33	50.85
CDY30923	Canola	cytosol	51.74	50.28
CDY70563	Canola	cytosol	52.33	50.28
Bra031717.1-P	Field mustard	cytosol	47.67	49.4
CDY34887	Canola	cytosol	47.09	48.8
CDY07805	Canola	nucleus	47.09	48.8
KRH57030	Soybean	cytosol	50.58	48.33
KRH03351	Soybean	cytosol	50.58	47.8
GSMUA_Achr5P23980_001	Banana	cytosol	37.21	46.72
GSMUA_Achr9P28200_001	Banana	cytosol	44.77	46.11
TraesCS7D01G194000.1	Wheat	cytosol	42.44	45.06
KRH63480	Soybean	cytosol	44.77	44.51
KXG30786	Sorghum	cytosol	43.02	44.05
KRH54436	Soybean	cytosol	45.35	43.09
TraesCS7B01G098100.1	Wheat	cytosol	41.28	42.77
GSMUA_Achr3P06040_001	Banana	cytosol	43.6	42.61
Zm00001d017998_P001	Maize	cytosol	42.44	42.2
TraesCS7A01G192700.1	Wheat	cytosol	40.7	41.92
GSMUA_Achr9P18270_001	Banana	cytosol	44.19	41.76
EER96686	Sorghum	cytosol	42.44	40.78
Os08t0420700-01	Rice	cytosol, nucleus, plastid	44.19	40.21
TraesCS6B01G339300.1	Wheat	cytosol	41.86	40.0
TraesCS6A01G309500.1	Wheat	cytosol	41.86	40.0
OQU80443	Sorghum	cytosol	43.02	40.0
TraesCS6D01G288900.1	Wheat	cytosol	41.86	40.0
Zm00001d020348_P001	Maize	cytosol	42.44	39.67
TraesCS5A01G200100.1	Wheat	cytosol	45.35	39.59
GSMUA_Achr3P10380_001	Banana	cytosol, nucleus, plastid	42.44	39.46
Os02t0741700-01	Rice	cytosol	37.79	39.16
KXG19676	Sorghum	cytosol	39.53	39.08
Os06t0236300-01	Rice	cytosol	42.44	38.62
Zm00001d037251_P001	Maize	cytosol	40.12	38.12
Zm00001d052277_P001	Maize	cytosol	37.21	38.1
HORVU5Hr1G059690.7	Barley	nucleus	44.77	37.93
HORVU6Hr1G076380.4	Barley	cytosol	37.79	37.79
TraesCS5B01G198500.1	Wheat	cytosol	43.6	37.5
Os09t0381600-01	Rice	cytosol	45.35	37.5
TraesCS5B01G198400.1	Wheat	cytosol	43.02	37.0
TraesCS5D01G205700.1	Wheat	cytosol	43.02	37.0
Zm00001d032324_P001	Maize	cytosol	39.53	36.56
TraesCS2B01G099400.1	Wheat	cytosol	42.44	36.14
TraesCS2A01G084700.1	Wheat	cytosol	41.86	36.0
TraesCS2D01G082500.1	Wheat	cytosol	40.7	35.9
TraesCS2A01G084600.1	Wheat	cytosol	41.28	35.86
Zm00001d044783_P001	Maize	cytosol	36.05	35.63
HORVU7Hr1G039360.7	Barley	cytosol	36.05	35.63
TraesCS2D01G082600.1	Wheat	cytosol	41.28	35.15
KRH58136	Soybean	nucleus	36.63	35.0
HORVU7Hr1G039390.1	Barley	cytosol	33.72	34.94
TraesCS2D01G082400.1	Wheat	cytosol, mitochondrion, nucleus	40.12	34.67
TraesCS2B01G099100.1	Wheat	nucleus	40.12	34.5
TraesCS2A01G084400.1	Wheat	cytosol	40.12	34.5
TraesCS2D01G082300.1	Wheat	cytosol	40.12	34.5
HORVU2Hr1G013820.4	Barley	cytosol	40.12	34.16
TraesCS2B01G099200.1	Wheat	nucleus	39.53	34.0
KRH04405	Soybean	cytosol	34.88	33.71
TraesCS2A01G084500.1	Wheat	cytosol	38.95	32.68
TraesCS2B01G098900.1	Wheat	nucleus, plastid	28.49	27.07

Protein Annotations

EMBL:ACUP02000716	EnsemblPlants:KRH69484	EnsemblPlantsGene:GLYMA_02G030800	EntrezGene:100782731	InterPro:DUF4228_plant	PANTHER:PTHR33413
PANTHER:PTHR33413:SF4	PFAM:PF14009	ProteinID:KRH69484	ProteinID:KRH69484.1	SEG:seg	UniParc:UPI0002336F45
UniProt:I1JBY7	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:2831244..2833073

Molecular Weight (calculated)

19194.1 Da

IEP (calculated)

10.774

GRAVY (calculated)

-0.628

Length

172 amino acids

Sequence
(BLAST)

001: MGNCQAVDAA VLVIQHPCGK IERLYWPVTA SEVMRTNPGH YVSLIIPLPV PPQEQNQEQK TVRFTRVKLL RPNETLNLGH AYRLITTQEV MKVLKAKKHA
101: KTKKPLAEAA EKPHRVQSEK QSSASEAHTA GESTHQGMRA ERHRPRTASA NPAVVRSKSW RPSLQSISEL AS

Best Arabidopsis Sequence Match ( AT1G60010.1 )
(BLAST)

001: MGNCQAVDAA ALVLQHPDGK IDRYYGPVSV SEIMRMYPGH YVSLIIPLPE KNIPATTTTT DDKSERKVVR FTRVKLLRPT ENLVLGHAYR LITSQEVMKV
101: LRAKKYAKTK KHQSETSKEK KKPSSEKKID EESDKNQNLE TKDEKQRSVL TNSASSRSKT WRPSLQSISE ATS

Arabidopsis Description

D-ribose-binding periplasmic protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUJ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.