CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97711
KRG98876
KRH03947
KRH14452
KRH14933
KRH31163
KRH46090
KRH57220
KRH73205
KRH73702

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G67620.1	KRG98876	AT2G42790.1	21798944
AT5G67620.1	KRH14452	AT2G42790.1	21798944
AT5G67620.1	KRH46090	AT2G42790.1	21798944
AT5G67620.1	KRH73702	AT2G42790.1	21798944
AT5G67620.1	KRG97711	AT3G08530.1	21798944
AT5G67620.1	KRH14933	AT3G08530.1	21798944
AT5G67620.1	KRH31163	AT3G08530.1	21798944
AT5G67620.1	KRH73205	AT3G08530.1	21798944
AT5G67620.1	KRH03947	AT4G24840.1	21798944
AT5G67620.1	KRH57220	AT4G24840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58136	Soybean	nucleus	84.83	83.89
VIT_00s0802g00020.t01	Wine grape	cytosol	61.24	60.56
PGSC0003DMT400055171	Potato	cytosol	59.55	59.89
Solyc02g092240.2.1	Tomato	cytosol	57.87	58.86
CDY18668	Canola	nucleus	52.25	51.96
Bra037835.1-P	Field mustard	nucleus	52.81	51.93
CDX81304	Canola	nucleus	53.37	51.63
CDY37844	Canola	nucleus	51.69	51.4
AT5G67620.1	Thale cress	nucleus	51.69	50.55
CDY43585	Canola	nucleus	48.31	48.86
CDY36508	Canola	nucleus	44.38	47.88
Bra024434.1-P	Field mustard	nucleus	44.38	47.88
Bra031842.1-P	Field mustard	nucleus	51.12	47.64
CDY08733	Canola	nucleus	43.82	47.27
GSMUA_Achr9P18980_001	Banana	nucleus	26.97	46.6
GSMUA_Achr6P24780_001	Banana	cytosol	47.75	42.93
GSMUA_Achr8P31090_001	Banana	cytosol	44.94	38.46
Zm00001d048162_P001	Maize	nucleus	44.38	37.8
GSMUA_Achr7P26140_001	Banana	cytosol	36.52	37.14
Zm00001d028118_P001	Maize	cytosol	44.94	36.87
TraesCS4B01G260900.1	Wheat	cytosol	45.51	36.32
Os03t0200200-01	Rice	cytosol	43.82	36.28
GSMUA_Achr1P22560_001	Banana	cytosol	40.45	35.64
KRG99257	Soybean	cytosol	34.27	35.06
KXG39943	Sorghum	cytosol	43.82	34.98
KRH69484	Soybean	cytosol	33.71	34.88
KRH45741	Soybean	cytosol	34.27	34.66
TraesCS4A01G039700.1	Wheat	cytosol	43.82	34.51
TraesCS4D01G260500.1	Wheat	cytosol	43.82	34.51
KRH57030	Soybean	cytosol	34.83	34.44
KRH74672	Soybean	cytosol	33.15	34.3
GSMUA_Achr7P26120_001	Banana	cytosol	38.2	34.0
KRH63480	Soybean	cytosol	32.58	33.53
KRH03351	Soybean	cytosol	33.71	32.97
KRH54436	Soybean	cytosol	32.58	32.04
Os10t0352000-01	Rice	cytosol	25.84	27.88

Protein Annotations

EMBL:ACUP02010413	EMBL:BT096601	EnsemblPlants:KRH04405	EnsemblPlantsGene:GLYMA_17G160100	EntrezGene:100812463	InterPro:DUF4228_plant
PANTHER:PTHR33413	PANTHER:PTHR33413:SF1	PFAM:PF14009	ProteinID:KRH04405	ProteinID:KRH04405.1	SEG:seg
UniParc:UPI0001B16981	UniProt:C6TG56	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:13859306..13863085

Molecular Weight (calculated)

19509.5 Da

IEP (calculated)

10.366

GRAVY (calculated)

-0.556

Length

178 amino acids

Sequence
(BLAST)

001: MGNCQAAEAA TVVIQHPGNK IERVYWSLSA HEVMNSNPGH YVALVVSSPT LMAENGTPMK QLKLLRPDDT LHIGQVYRLI SFEDVLKEFA SKKCGKLGKL
101: LKETGSHGIQ MKHKDSRALN PSRNSKSEFG SIKVEQEIQR MGNNGRSNNN NKKGVGRPFV GSGGQWRPAL QSIAEIGT

Best Arabidopsis Sequence Match ( AT5G67620.1 )
(BLAST)

001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS

Arabidopsis Description

At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.