Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P18980_001 | Banana | nucleus | 27.23 | 53.4 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 49.01 | 47.6 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 44.55 | 45.45 |
| GSMUA_Achr7P26140_001 | Banana | cytosol | 39.11 | 45.14 |
| Bra037835.1-P | Field mustard | nucleus | 38.61 | 43.09 |
| CDY18668 | Canola | nucleus | 38.12 | 43.02 |
| GSMUA_Achr7P26120_001 | Banana | cytosol | 42.08 | 42.5 |
| CDY37844 | Canola | nucleus | 37.62 | 42.46 |
| GSMUA_Achr5P23980_001 | Banana | cytosol | 28.71 | 42.34 |
| CDY43585 | Canola | nucleus | 36.63 | 42.05 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 37.13 | 41.67 |
| AT5G67620.1 | Thale cress | nucleus | 37.13 | 41.21 |
| Os03t0200200-01 | Rice | cytosol | 43.56 | 40.93 |
| CDX81304 | Canola | nucleus | 37.13 | 40.76 |
| KRH04405 | Soybean | cytosol | 35.64 | 40.45 |
| KRH58136 | Soybean | nucleus | 35.64 | 40.0 |
| Zm00001d028118_P001 | Maize | cytosol | 42.57 | 39.63 |
| PGSC0003DMT400055171 | Potato | cytosol | 34.65 | 39.55 |
| Solyc02g092240.2.1 | Tomato | cytosol | 34.16 | 39.43 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 44.06 | 39.38 |
| Bra031842.1-P | Field mustard | nucleus | 37.13 | 39.27 |
| Zm00001d048162_P001 | Maize | nucleus | 40.59 | 39.23 |
| KXG39943 | Sorghum | cytosol | 43.07 | 39.01 |
| TraesCS4B01G260900.1 | Wheat | cytosol | 42.57 | 38.56 |
| TraesCS4D01G260500.1 | Wheat | cytosol | 42.57 | 38.05 |
| CDY36508 | Canola | nucleus | 30.69 | 37.58 |
| Bra024434.1-P | Field mustard | nucleus | 30.69 | 37.58 |
| CDY08733 | Canola | nucleus | 30.2 | 36.97 |
| GSMUA_Achr3P06040_001 | Banana | cytosol | 31.68 | 36.36 |
| GSMUA_Achr9P28200_001 | Banana | cytosol | 28.22 | 34.13 |
| GSMUA_Achr9P18270_001 | Banana | cytosol | 29.7 | 32.97 |
| GSMUA_Achr3P10380_001 | Banana | cytosol, nucleus, plastid | 29.21 | 31.89 |
| Os10t0352000-01 | Rice | cytosol | 22.28 | 27.27 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P22560_001 | EnsemblPlants:GSMUA_Achr1T22560_001 | EnsemblPlantsGene:GSMUA_Achr1G22560_001 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PFAM:PF14009 |
| SEG:seg | UniParc:UPI00029545EA | UniProt:M0S264 | MapMan:35.2 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G22560_001]
Coordinates
chr1:-:17002419..17003243
Molecular Weight (calculated)
21315.3 Da
IEP (calculated)
11.953
GRAVY (calculated)
-0.375
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAAEAA TVVIQHPGGR VERAYWSLTA SQVMAANPGH YVAVIIVAPP PSALNSAASS SSACHDSGGG RGARVKHLRL LRANDTLHIG HVYRLVSFQD
101: VPREFASKRH VRLSRLLAKP TEMTSPSSTR GNGSGPASAG GRRHQSRREA KAATELEEVV RGMMAAETTA ATRTTRARAG GAAPARHGRW RPALRSIAEV
201: GS
101: VPREFASKRH VRLSRLLAKP TEMTSPSSTR GNGSGPASAG GRRHQSRREA KAATELEEVV RGMMAAETTA ATRTTRARAG GAAPARHGRW RPALRSIAEV
201: GS
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.