Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G260500.1 | Wheat | cytosol | 79.82 | 78.76 |
| TraesCS4A01G039700.1 | Wheat | cytosol | 79.82 | 78.76 |
| Os03t0200200-01 | Rice | cytosol | 49.33 | 51.16 |
| Zm00001d048162_P001 | Maize | nucleus | 47.09 | 50.24 |
| Zm00001d028118_P001 | Maize | cytosol | 48.43 | 49.77 |
| KXG39943 | Sorghum | cytosol | 47.09 | 47.09 |
| KRH04405 | Soybean | cytosol | 36.32 | 45.51 |
| VIT_00s0802g00020.t01 | Wine grape | cytosol | 36.32 | 45.0 |
| KRH58136 | Soybean | nucleus | 36.32 | 45.0 |
| PGSC0003DMT400055171 | Potato | cytosol | 35.43 | 44.63 |
| CDY18668 | Canola | nucleus | 35.43 | 44.13 |
| Solyc02g092240.2.1 | Tomato | cytosol | 34.53 | 44.0 |
| GSMUA_Achr6P24780_001 | Banana | cytosol | 39.01 | 43.94 |
| CDY37844 | Canola | nucleus | 34.98 | 43.58 |
| AT5G67620.1 | Thale cress | nucleus | 35.43 | 43.41 |
| Bra037835.1-P | Field mustard | nucleus | 34.98 | 43.09 |
| GSMUA_Achr1P22560_001 | Banana | cytosol | 38.56 | 42.57 |
| CDX81304 | Canola | nucleus | 34.98 | 42.39 |
| GSMUA_Achr8P31090_001 | Banana | cytosol | 39.46 | 42.31 |
| CDY43585 | Canola | nucleus | 32.74 | 41.48 |
| Bra031842.1-P | Field mustard | nucleus | 34.53 | 40.31 |
| Bra024434.1-P | Field mustard | nucleus | 29.15 | 39.39 |
| CDY36508 | Canola | nucleus | 29.15 | 39.39 |
| CDY08733 | Canola | nucleus | 28.7 | 38.79 |
| TraesCS2B01G099400.1 | Wheat | cytosol | 33.18 | 36.63 |
| TraesCS7B01G098100.1 | Wheat | cytosol | 26.91 | 36.14 |
| TraesCS6B01G339300.1 | Wheat | cytosol | 29.15 | 36.11 |
| TraesCS2B01G099200.1 | Wheat | nucleus | 31.84 | 35.5 |
| TraesCS2B01G099100.1 | Wheat | nucleus | 30.94 | 34.5 |
| TraesCS5B01G198500.1 | Wheat | cytosol | 30.49 | 34.0 |
| TraesCS5B01G198400.1 | Wheat | cytosol | 30.04 | 33.5 |
| TraesCS2B01G098900.1 | Wheat | nucleus, plastid | 23.77 | 29.28 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G260900.1 | EnsemblPlantsGene:TraesCS4B01G260900 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005856 |
| GO:GO:0005874 | InterPro:DUF4228_plant | PANTHER:PTHR33413 | PANTHER:PTHR33413:SF1 | PFAM:PF14009 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:-:529296888..529298426
Molecular Weight (calculated)
23632.9 Da
IEP (calculated)
6.043
GRAVY (calculated)
-0.459
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCQAADAA AVVIQHPASG RTELAYWSLP AGEVMAANPG HYVAAVITAP HTASEGPGAA PPVKHLKLLR PDDTLLLGRV YRLVSFEEVL KEFATKRHVK
101: LSRVMVKAKD DVAPTKPAKP RRRRGSSGAD AGVVREESDR SLAKIMRQSV EEEEKEAAAG PTSGPVPKPG ADDNNGVAAS EPGLDDDDDD CDLESLLPPG
201: LALGRRLGPQ WRPALQSIAE GRD
101: LSRVMVKAKD DVAPTKPAKP RRRRGSSGAD AGVVREESDR SLAKIMRQSV EEEEKEAAAG PTSGPVPKPG ADDNNGVAAS EPGLDDDDDD CDLESLLPPG
201: LALGRRLGPQ WRPALQSIAE GRD
001: MGNCQAAEAA TVLIHHPAEN KVERIYWSVT ASDIMKSNPG HYVAVVVTSP TMKNEKGLPL KQLKLLRPDD TLLIGHVYRL VSFEEVLNEF ATKKCVKLGK
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
101: LLKEGGGLDL TKKKTKHRKK KLDQETGKVN PNSDPNPNQD GADNAVAGEN GGDGFMRRSH GGGRGGGGWR PALHSIPEFG SS
Arabidopsis Description
At5g67620 [Source:UniProtKB/TrEMBL;Acc:Q9FJW1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.