Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- plastid 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
25769308
unclear: 25769308 |
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G182300.1 | Wheat | extracellular, golgi | 98.38 | 99.36 |
| TraesCS4D01G130900.1 | Wheat | golgi, unclear | 98.27 | 99.24 |
| TraesCS5B01G152300.1 | Wheat | unclear | 96.3 | 97.66 |
| EES07849 | Sorghum | plastid | 95.73 | 97.02 |
| KXG22761 | Sorghum | plastid | 95.61 | 96.84 |
| Os11t0104900-00 | Rice | plasma membrane | 39.03 | 96.71 |
| Zm00001d044614_P086 | Maize | plastid | 95.55 | 96.61 |
| Zm00001d023218_P064 | Maize | plastid | 95.03 | 95.75 |
| HORVU4Hr1G024710.4 | Barley | plastid | 98.44 | 95.73 |
| Zm00001d005090_P106 | Maize | plastid | 94.46 | 94.08 |
| Os12t0104766-00 | Rice | plasma membrane | 31.24 | 93.6 |
| Os11t0104866-00 | Rice | plasma membrane | 31.18 | 93.43 |
| Zm00001d052308_P046 | Maize | cytosol, plastid | 92.55 | 92.07 |
| VIT_06s0004g06860.t01 | Wine grape | cytosol, plastid | 90.36 | 91.79 |
| GSMUA_Achr5P08520_001 | Banana | plastid | 90.13 | 91.39 |
| GSMUA_Achr4P16770_001 | Banana | cytosol | 90.47 | 91.16 |
| KRG97711 | Soybean | endoplasmic reticulum, nucleus | 89.26 | 90.94 |
| VIT_13s0067g01290.t01 | Wine grape | extracellular | 89.32 | 90.79 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 71.19 | 90.73 |
| Solyc06g051310.2.1 | Tomato | nucleus | 89.09 | 90.71 |
| KRH31163 | Soybean | endoplasmic reticulum | 88.97 | 90.65 |
| GSMUA_Achr4P18860_001 | Banana | cytosol | 84.64 | 90.55 |
| KRH14933 | Soybean | nucleus | 88.63 | 90.29 |
| KRH73205 | Soybean | nucleus | 88.91 | 90.22 |
| Solyc05g052510.2.1 | Tomato | nucleus, plastid | 88.86 | 90.21 |
| CDY36318 | Canola | cytosol | 38.16 | 89.81 |
| AT3G11130.1 | Thale cress | cytosol, plasma membrane | 88.39 | 89.79 |
| AT3G08530.1 | Thale cress | cytosol, plasma membrane, plastid | 88.22 | 89.72 |
| CDY00997 | Canola | extracellular | 88.39 | 89.69 |
| CDY36301 | Canola | cytosol | 86.78 | 89.46 |
| CDY00724 | Canola | cytosol | 86.72 | 89.4 |
| KRH28591 | Soybean | endoplasmic reticulum | 87.82 | 89.37 |
| Solyc03g096000.2.1 | Tomato | nucleus | 87.82 | 89.37 |
| Bra034864.1-P | Field mustard | cytosol | 76.73 | 89.31 |
| CDX73889 | Canola | cytosol | 86.78 | 89.3 |
| KRH76885 | Soybean | endoplasmic reticulum | 87.7 | 89.25 |
| CDY07954 | Canola | cytosol | 86.26 | 89.19 |
| Bra034166.1-P | Field mustard | cytosol | 74.54 | 89.16 |
| CDX74011 | Canola | cytosol | 86.2 | 88.97 |
| CDY22158 | Canola | cytosol | 9.76 | 88.95 |
| KRH72708 | Soybean | endoplasmic reticulum, mitochondrion | 87.59 | 88.92 |
| CDY08549 | Canola | cytosol | 79.1 | 88.67 |
| KRH17059 | Soybean | endoplasmic reticulum, nucleus | 87.12 | 88.61 |
| Os12t0104800-01 | Rice | cytosol | 6.24 | 88.52 |
| GSMUA_AchrUn_... | Banana | plasma membrane | 86.37 | 87.74 |
| Bra001286.1-P | Field mustard | cytosol | 74.88 | 87.4 |
| GSMUA_Achr5P14240_001 | Banana | cytosol, plasma membrane, plastid | 87.64 | 87.09 |
| Bra001391.1-P | Field mustard | cytosol | 72.46 | 86.43 |
| CDY27997 | Canola | cytosol | 77.02 | 83.38 |
| Bra029698.1-P | Field mustard | cytosol | 70.79 | 82.89 |
| CDY35984 | Canola | cytosol | 76.79 | 82.81 |
| CDY36317 | Canola | cytosol | 11.72 | 80.24 |
| KRH12961 | Soybean | cytosol | 4.33 | 78.12 |
| KRH25762 | Soybean | cytosol | 4.16 | 75.0 |
| CDY22157 | Canola | cytosol | 3.35 | 74.36 |
| VIT_16s0115g00130.t01 | Wine grape | cytosol | 4.04 | 60.34 |
| VIT_03s0017g00210.t01 | Wine grape | cytosol, extracellular | 1.79 | 58.49 |
| VIT_19s0027g01340.t01 | Wine grape | cytosol | 8.72 | 49.19 |
| CDY06504 | Canola | extracellular, mitochondrion | 2.14 | 39.36 |
Protein Annotations
| Gene3D:1.25.40.10 | Gene3D:1.25.40.730 | Gene3D:2.130.10.110 | MapMan:22.1.1.1 | InterPro:ARM-type_fold | InterPro:Clathrin_H-chain/VPS_repeat |
| InterPro:Clathrin_H-chain_N | InterPro:Clathrin_H-chain_linker_core | InterPro:Clathrin_H-chain_propeller_rpt | InterPro:Clathrin_heavy_chain | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030130 | GO:GO:0030132 |
| GO:GO:0032051 | GO:GO:0048268 | GO:GO:0071439 | InterPro:IPR000547 | InterPro:IPR011990 | InterPro:IPR016025 |
| PFAM:PF00637 | PFAM:PF01394 | PFAM:PF09268 | PFAM:PF13838 | PIRSF:PIRSF002290 | PFscan:PS50236 |
| PANTHER:PTHR10292 | PANTHER:PTHR10292:SF1 | SMART:SM00299 | SUPFAM:SSF48371 | SUPFAM:SSF50989 | InterPro:TPR-like_helical_dom_sf |
| EnsemblPlantsGene:TraesCS4B01G136100 | EnsemblPlants:TraesCS4B01G136100.2 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4B:+:179727493..179737705
Molecular Weight (calculated)
195982.0 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.162
Length
1732 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAANAPIAM REALTLTSLG IAPQFVTFTH VTMESDRYIC VRETSPQNSV VIIDMVMPSQ PLRRPITADS ALMNPNTRIL ALKAQIAGTT QDHLQIFNIE
0101: AKTKVKSHQM PEQVVFWKWI TPKLLGLVTQ TSVYHWSIEG DSEPTKMFDR TANLANNQII NYRCDPAEKW LVLIGIAPGA PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FATFKVPGNE NPSTLICFAS KATNAGQITS KLHVIELGAQ PGKPGFSKKQ ADLFFPPDFQ DDFPVAMQIS QKYGLVYVIT KLGLLFVYDL
0301: ETAAAVYRNR ISPDPIFLTA ESSTTGGFYA INRRGQVLHA TVNDATVVPF VSGQLNNLEL AVNLAKRANL PGAENLVVQR FQELFSQTKY KEAAELAAES
0401: PQGLLRTPET VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NAYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGCPLDY NTITDLFLQR NMIREATAFL LDVLKPNLEE HAFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYLRA LQFNKSYIVI QHYAELHDIK RVIVNTHAIE PQALVEFFGT LSKEWALECM KDLLLVNLRG
0701: NLQIVVQAAK EYSEQLGVDG CIKLFEQFKS YEGLYFFLGS YLSSSEDPDI HFKYIESAAR TGQIKEVERV TRESNFYDAE KTKNFLMEAK LPDARPLINV
0801: CDRFGFVPDL THYLYTNNML RYIEGYVQKV NPGNAPLVVG QLLDDECPED FIKGLILSVR SLLPVEPLVD ECEKRNRLRL LTQFLEHLVS EGSQDVHVHN
0901: ALGKIIIDSN NNPEHFLTTN PFYDSRVVGK YCEKRDPTLA VVAYRRGQCD DELINVTNKN SLFKLQARYV VERMDGDLWD KVLLPENEYR RQFIDQVVST
1001: ALPESKSPEQ VSAAVKAFME ADLPHELIEL LEKIVLQNSA FSGNFNLQNL LILTAIKADP SRVMDYVNRL DNFDGPAVGE VAVEAQLYEE AFAIFKKFNL
1101: NVQAVDVLLD NIRSIERAEE FAFRVEEDAV WSQVAKAQLR EGLVSEAIES FIRADDATHF LDVIRAAEEA DVYHDLVKYL LMVRQKAREP KVDGELIFAY
1201: AKIDRLSDIE EFILMPNVAN LQNVGDRLYD EELCEAAKII YAFISNWAKL AVTLVKLKQF QGAVDAARKA NSAKTWKEVC FACVDAEEFR LAQICGLNII
1301: IQVDDLEEVS EYYQNRGCFN ELISLMESGL GLERAHMGIF TELGVLYARY RPEKLMEHIK LFSTRLNIPK LIRACDEQQH WKELTYLYIQ YDEFDNAATT
1401: IMNHSPDAWD HMQFKDVAVK VANVEIYYKA VHFYLQEHPD LINDLLNVLA LRLDHTRVVD IMRKAGQLHL VKPYMVAVQS NNVSAVNEAL NELYVEEEDY
1501: ERLRESVDMH DNFDQIGLAQ KLEKHELLEM RRIAAYIYKK AGRWKQSIAL SKIDNMYKDC METCSQSGDR ELSEDLLVYF IEQGKKECFA SCLFICYDLI
1601: RVDVALELAW TNNMLDFAFP YLLQFIREYT SKVDDLVKDR IELQKEEKAK EQEEKDVVAQ QNMYAQLLPL ALPAPPGMGG PPPMGGMGMP PMGGMGMPPM
1701: GGMGMPPMGG MGMPPMGPGP MPAYGMPPMG NY
0101: AKTKVKSHQM PEQVVFWKWI TPKLLGLVTQ TSVYHWSIEG DSEPTKMFDR TANLANNQII NYRCDPAEKW LVLIGIAPGA PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FATFKVPGNE NPSTLICFAS KATNAGQITS KLHVIELGAQ PGKPGFSKKQ ADLFFPPDFQ DDFPVAMQIS QKYGLVYVIT KLGLLFVYDL
0301: ETAAAVYRNR ISPDPIFLTA ESSTTGGFYA INRRGQVLHA TVNDATVVPF VSGQLNNLEL AVNLAKRANL PGAENLVVQR FQELFSQTKY KEAAELAAES
0401: PQGLLRTPET VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NAYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGCPLDY NTITDLFLQR NMIREATAFL LDVLKPNLEE HAFLQTKVLE
0601: INLVTYPNVA DAILANGMFS HYDRPRIAQL CEKAGLYLRA LQFNKSYIVI QHYAELHDIK RVIVNTHAIE PQALVEFFGT LSKEWALECM KDLLLVNLRG
0701: NLQIVVQAAK EYSEQLGVDG CIKLFEQFKS YEGLYFFLGS YLSSSEDPDI HFKYIESAAR TGQIKEVERV TRESNFYDAE KTKNFLMEAK LPDARPLINV
0801: CDRFGFVPDL THYLYTNNML RYIEGYVQKV NPGNAPLVVG QLLDDECPED FIKGLILSVR SLLPVEPLVD ECEKRNRLRL LTQFLEHLVS EGSQDVHVHN
0901: ALGKIIIDSN NNPEHFLTTN PFYDSRVVGK YCEKRDPTLA VVAYRRGQCD DELINVTNKN SLFKLQARYV VERMDGDLWD KVLLPENEYR RQFIDQVVST
1001: ALPESKSPEQ VSAAVKAFME ADLPHELIEL LEKIVLQNSA FSGNFNLQNL LILTAIKADP SRVMDYVNRL DNFDGPAVGE VAVEAQLYEE AFAIFKKFNL
1101: NVQAVDVLLD NIRSIERAEE FAFRVEEDAV WSQVAKAQLR EGLVSEAIES FIRADDATHF LDVIRAAEEA DVYHDLVKYL LMVRQKAREP KVDGELIFAY
1201: AKIDRLSDIE EFILMPNVAN LQNVGDRLYD EELCEAAKII YAFISNWAKL AVTLVKLKQF QGAVDAARKA NSAKTWKEVC FACVDAEEFR LAQICGLNII
1301: IQVDDLEEVS EYYQNRGCFN ELISLMESGL GLERAHMGIF TELGVLYARY RPEKLMEHIK LFSTRLNIPK LIRACDEQQH WKELTYLYIQ YDEFDNAATT
1401: IMNHSPDAWD HMQFKDVAVK VANVEIYYKA VHFYLQEHPD LINDLLNVLA LRLDHTRVVD IMRKAGQLHL VKPYMVAVQS NNVSAVNEAL NELYVEEEDY
1501: ERLRESVDMH DNFDQIGLAQ KLEKHELLEM RRIAAYIYKK AGRWKQSIAL SKIDNMYKDC METCSQSGDR ELSEDLLVYF IEQGKKECFA SCLFICYDLI
1601: RVDVALELAW TNNMLDFAFP YLLQFIREYT SKVDDLVKDR IELQKEEKAK EQEEKDVVAQ QNMYAQLLPL ALPAPPGMGG PPPMGGMGMP PMGGMGMPPM
1701: GGMGMPPMGG MGMPPMGPGP MPAYGMPPMG NY
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.