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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 1
  • peroxisome 1
PPI

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G182300.1 Wheat extracellular, golgi 95.4 99.07
TraesCS4D01G130900.1 Wheat golgi, unclear 95.28 98.95
TraesCS4B01G136100.2 Wheat golgi, unclear 95.73 98.44
EES07849 Sorghum plastid 93.15 97.07
KXG22761 Sorghum plastid 93.04 96.9
Os11t0104900-00 Rice plasma membrane 37.96 96.71
Zm00001d044614_P086 Maize plastid 92.98 96.67
Zm00001d023218_P064 Maize plastid 92.48 95.81
Zm00001d005090_P106 Maize plastid 91.97 94.19
Os12t0104766-00 Rice plasma membrane 30.43 93.77
Os11t0104866-00 Rice plasma membrane 30.38 93.6
HORVU5Hr1G048010.1 Barley plastid 94.55 93.4
Zm00001d052308_P046 Maize cytosol, plastid 90.12 92.19
VIT_06s0004g06860.t01 Wine grape cytosol, plastid 87.76 91.67
GSMUA_Achr5P08520_001 Banana plastid 87.65 91.39
GSMUA_Achr4P16770_001 Banana cytosol 87.82 90.98
KRG97711 Soybean endoplasmic reticulum, nucleus 86.81 90.94
GSMUA_AchrUn_... Banana plasma membrane 69.29 90.8
VIT_13s0067g01290.t01 Wine grape extracellular 86.81 90.73
Solyc06g051310.2.1 Tomato nucleus 86.58 90.65
KRH31163 Soybean endoplasmic reticulum 86.52 90.65
GSMUA_Achr4P18860_001 Banana cytosol 82.26 90.49
KRH14933 Soybean nucleus 86.19 90.29
Solyc05g052510.2.1 Tomato nucleus, plastid 86.41 90.21
KRH73205 Soybean nucleus 86.41 90.16
CDY36318 Canola cytosol 37.17 89.95
AT3G11130.1 Thale cress cytosol, plasma membrane 85.91 89.74
AT3G08530.1 Thale cress cytosol, plasma membrane, plastid 85.79 89.72
CDY00997 Canola extracellular 85.91 89.63
CDY36301 Canola cytosol 84.33 89.4
CDY00724 Canola cytosol 84.28 89.35
Os12t0104800-01 Rice cytosol 6.12 89.34
KRH28591 Soybean endoplasmic reticulum 85.35 89.31
Solyc03g096000.2.1 Tomato nucleus 85.35 89.31
Bra034864.1-P Field mustard cytosol 74.56 89.25
CDY07954 Canola cytosol 83.89 89.19
KRH76885 Soybean endoplasmic reticulum 85.23 89.19
CDX73889 Canola cytosol 84.28 89.19
Bra034166.1-P Field mustard cytosol 72.38 89.02
CDY22158 Canola cytosol 9.49 88.95
KRH72708 Soybean endoplasmic reticulum, mitochondrion 85.18 88.92
CDX74011 Canola cytosol 83.72 88.86
CDY08549 Canola cytosol 76.87 88.61
KRH17059 Soybean endoplasmic reticulum, nucleus 84.73 88.61
GSMUA_AchrUn_... Banana plasma membrane 84.0 87.74
GSMUA_Achr5P14240_001 Banana cytosol, plasma membrane, plastid 85.35 87.21
Bra001286.1-P Field mustard cytosol 72.66 87.2
Bra001391.1-P Field mustard cytosol 70.3 86.23
CDY27997 Canola cytosol 74.85 83.31
Bra029698.1-P Field mustard cytosol 68.73 82.76
CDY35984 Canola cytosol 74.56 82.69
CDY36317 Canola cytosol 11.34 79.84
KRH12961 Soybean cytosol 4.21 78.12
KRH25762 Soybean cytosol 4.04 75.0
CDY22157 Canola cytosol 3.26 74.36
VIT_16s0115g00130.t01 Wine grape cytosol 3.93 60.34
VIT_03s0017g00210.t01 Wine grape cytosol, extracellular 1.74 58.49
VIT_19s0027g01340.t01 Wine grape cytosol 8.53 49.51
CDY06504 Canola extracellular, mitochondrion 2.08 39.36
Protein Annotations
Gene3D:1.25.40.10Gene3D:1.25.40.730Gene3D:2.130.10.110MapMan:22.1.1.1UniProt:A0A287NKN4InterPro:ARM-type_fold
InterPro:Clathrin_H-chain/VPS_repeatInterPro:Clathrin_H-chain_NInterPro:Clathrin_H-chain_linker_coreInterPro:Clathrin_H-chain_propeller_rptInterPro:Clathrin_heavy_chainncoils:Coil
GO:GO:0003674GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0005886GO:GO:0005905GO:GO:0006810
GO:GO:0006886GO:GO:0008150GO:GO:0009987GO:GO:0016020GO:GO:0016043GO:GO:0016192
GO:GO:0030130GO:GO:0030132GO:GO:0030659GO:GO:0031410GO:GO:0032051GO:GO:0048268
GO:GO:0071439EnsemblPlantsGene:HORVU4Hr1G024710EnsemblPlants:HORVU4Hr1G024710.4InterPro:IPR000547InterPro:IPR011990InterPro:IPR016025
PFAM:PF00637PFAM:PF01394PFAM:PF09268PFAM:PF13838PIRSF:PIRSF002290PFscan:PS50236
PANTHER:PTHR10292PANTHER:PTHR10292:SF1SMART:SM00299SUPFAM:SSF48371SUPFAM:SSF50989InterPro:TPR-like_helical_dom_sf
UniParc:UPI000B46B3A8SEG:seg::::
Description
Clathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:A0A287NKN4]
Coordinates
chrchr4H:-:142633943..142655134
Molecular Weight (calculated)
201343.0 Da
IEP (calculated)
5.008
GRAVY (calculated)
-0.168
Length
1781 amino acids
Sequence
(BLAST)
0001: SLFRSDLSNT RAHTTSPPPP SRSRELSPPP PAAMAAANAP IAMREALTLT SLGIAPQFVT FTHVTMESDR YICVRETSPQ NSVVIIDMAM PSQPLRRPIT
0101: ADSALMNPNT RILALKAQIA GTTQDHLQIF NIEAKTKVKS HQMPEQVVFW KWITPKLLGL VTQTSVYHWS IEGDSEPTKM FDRTANLANN QIINYRCDPA
0201: EKWLVLIGIA PGAPERPQLV KGNMQLFSVD QQRSQALEAH AASFATFKVP GNENPSTLIC FASKATNAGQ ITSKLHVIEL GAQPGKPGFS KKQADLFFPP
0301: DFQDDFPVAM QISQKYGLVY VITKLGLLFV YDLETAAAVY RNRISPDPIF LTAESSTTGG FYAINRRGQV LHATVNDATV VPFVSGQLNN LELAVNLAKR
0401: ANLPGAENLV VQRFQELFSQ TKYKEAAELA AESPQGLLRT PETVAKFQSV PVQAGQTPPL LQYFGTLLTR GKLNAYESLE LSRLVVNQNK KNLLENWLAE
0501: DKLECSEELG DLVKTVDNDL ALKIYIKARA TPKVVAAFAE RREFDKILIY SKQVYCVGTA EFLFLVGSPQ FSLNIDSVVY FFYLFQVGYT PDYLFLLQTI
0601: LRTDPQGAVN FALMMSQMEG GCPLDYNTIT DLFLQRNMIR EATAFLLDVL KPNLEEHAFL QTKVLEINLV TYPNVADAIL ANGMFSHYDR PRIAQLCEKA
0701: GLYLRALQHY AELPDIKRVI VNTHAIEPQA LVEFFGTLSK EWALECMKDL LLVNLRGNLQ IVVQAAKEYS EQLGVDGCIK LFEQFKSYEG LYFFLGSYLS
0801: SSEDPDIHFK YIESAARTGQ IKEVERVTRE SNFYDAEKTK NFLMEAKLPD ARPLINVCDR FGFVPDLTHY LYTNNMLRYI EGYVQKVNPG NAPLVVGQLL
0901: DDECPEDFIK GLILSVRSLL PVEPLVDECE KRNRLRLLTQ FLEHLVSEGS QDVHVHNALG KIIIDSNNNP EHFLTTNPFY DSRVVGKYCE KRDPTLAVVA
1001: YRRGQCDDEL INVTNKNSLF KLQARYVVER MDGDLWDKVL LPENEYRRQF IDQVVSTALP ESKSPEQVSA AVKAFMEADL PHELIELLEK IVLQNSAFSG
1101: NFNLQNLLIL TAIKADPSRV MDYVNRLDNF DGPAVGEVAV EAQLYEEAFA IFKKFNLNVQ AVDVLLDNIR SIERAEEFAF RVEEDAVWSQ VAKAQLREGL
1201: VSEAIESFIR ADDATHFLDV IRAAEEADVY HDLVKYLLMV RQKAREPKVD GELIFAYAKI DRLSDIEEFI LMPNVANLQN VGDRLYDDEL YEAAKIIYAF
1301: ISNWAKLAVT LVKLKQFQGA VDAARKANSA KTWKEVCFAC VDAEEFRLAQ ICGLNIIIQV DDLEEVSEYY QNRGCFNELI SLMESGLGLE RAHMGIFTEL
1401: GVLYARYRPE KLMEHIKLFS TRLNIPKLIR ACDEQQHWKE LTYLYIQYDE FDNAATTIMN HSPDAWDHMQ FKDVAVKVAN VEIYYKAVHF YLQEHPDLIN
1501: DLLNVLALRL DHTRVIDIMR KAGQLHLVKP YMVAVQSNNV SAVNEALNEL YVEEEDYEKL RESVDMHDNF DQIGLAQKLE KHELLEMRRI AAYIYKKAGR
1601: WKQSIALSKK DNMYKDCMET CSQSGDRELS EDLLVYFIEQ GKKECFASCL FICYDLIRAD VALELAWTNN MLDFAFPYLL QFIREYTSKV DDLVKDRIES
1701: QKEEKAKEQE EKDVVAQQNM YAQLLPLALP APPGMGGPPP IGGMGMPPMG GMGMPPMGGM GMPPMGPGPM PAYGMPPMGN Y
Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)
0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY
Arabidopsis Description
CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [cytosol,plasma membrane,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.