Factsheet for VIT_06s0004g06860.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
plastid 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g01290.t01	Wine grape	extracellular	95.01	95.07
EES07849	Sorghum	plastid	92.84	92.63
KXG22761	Sorghum	plastid	92.79	92.51
TraesCS4A01G182300.1	Wheat	extracellular, golgi	91.85	91.31
TraesCS4D01G130900.1	Wheat	golgi, unclear	91.85	91.31
TraesCS5D01G158800.1	Wheat	plastid	91.38	91.22
TraesCS5A01G153500.1	Wheat	golgi, unclear	91.32	91.16
TraesCS5B01G152300.1	Wheat	unclear	91.32	91.16
TraesCS4B01G136100.2	Wheat	golgi, unclear	91.79	90.36
Os12t0104766-00	Rice	plasma membrane	30.56	90.14
Os11t0104866-00	Rice	plasma membrane	30.44	89.79
Os11t0104900-00	Rice	plasma membrane	36.66	89.41
HORVU4Hr1G024710.4	Barley	plastid	91.67	87.76
HORVU5Hr1G048010.1	Barley	plastid	91.14	86.19
Os12t0104800-01	Rice	cytosol	5.16	72.13
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	1.88	60.38
VIT_16s0115g00130.t01	Wine grape	cytosol	3.99	58.62
VIT_19s0027g01340.t01	Wine grape	cytosol	8.56	47.56

Protein Annotations

Gene3D:1.25.40.10	Gene3D:1.25.40.730	EntrezGene:100251869	wikigene:100251869	Gene3D:2.130.10.110	MapMan:22.1.1.1
EMBL:AM437593	InterPro:ARM-type_fold	ProteinID:CAN71721	ProteinID:CAN71721.1	ProteinID:CBI15929	ProteinID:CBI15929.3
InterPro:Clathrin_H-chain/VPS_repeat	InterPro:Clathrin_H-chain_N	InterPro:Clathrin_H-chain_linker_core	InterPro:Clathrin_H-chain_propeller_rpt	InterPro:Clathrin_heavy_chain	ncoils:Coil
UniProt:D7SJV3	EMBL:FN594951	GO:GO:0003674	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016192	GO:GO:0030130	GO:GO:0030132	GO:GO:0030659	GO:GO:0031410
GO:GO:0032051	GO:GO:0048268	GO:GO:0071439	InterPro:IPR000547	InterPro:IPR011990	InterPro:IPR016025
EntrezGene:LOC100251869	wikigene:LOC100251869	PFAM:PF00637	PFAM:PF01394	PFAM:PF09268	PFAM:PF13838
PIRSF:PIRSF002290	PFscan:PS50236	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SMART:SM00299	SUPFAM:SSF48371
SUPFAM:SSF50989	TIGR:TC53218	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001983611	ArrayExpress:VIT_06s0004g06860	EnsemblPlantsGene:VIT_06s0004g06860
EnsemblPlants:VIT_06s0004g06860.t01	unigene:Vvi.5152	RefSeq:XP_002276855	RefSeq:XP_002276855.1	SEG:seg	:

Description

Clathrin heavy chain [Source:UniProtKB/TrEMBL;Acc:D7SJV3]

Coordinates

chr6:+:7583660..7598850

Molecular Weight (calculated)

192962.0 Da

IEP (calculated)

5.183

GRAVY (calculated)

-0.145

Length

1705 amino acids

Sequence
(BLAST)

0001: MAAANAPISM KEALTLSSIG ISPQFMTFTH VTMESDKYIC VRETAPQNSV VIIDMSMPMQ PLRRPITADS ALMNPNSRIL ALKAQLPGTT QDHLQIFNIE
0101: MKAKMKSHQM PEQVVFWKWI TPKMLGLVTQ TSVFHWSIEG DSEPVKMFER TANLVNNQII NYRCDPSEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FASFKVLGNE NPSTLICFAS KTTNAGQITS KLHVIELGAQ PGKPGFTKKQ ADLFFPPDFA DDFPVSMQVS QKYGLIYVIT KLGLLFVYDL
0301: ETASAVYRNR ISPDPIFLTA EASSIGGFYA INRRGQVLLA TVNEATIVPF VSGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGLLRTPDT VAKFQSVPVQ SGQTPPLLQY FGTLLTRGKL NAFESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRSDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HGFLQSKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRIAQL CEKAGLYVRA LQHYTELPDI KRVIVNTHAI EPQALVEFFG TLSREWALEC MKDLLLVNLR ANLQIIVQTA
0701: KEYSEQLGVE ACIKLFEQFK SYEGLYFFLG SYLSSSEDPD IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMET KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSRVVG KYCEKRDPTL AVVAYRRGQC DDELINVTNK NSLFKLQARY VVERMDADLW EKVLSPDNEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG DVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNIQSIERAV EFAFRVEEDA VWSQVAKAQL KEGLVSDAIE SFIRADDATQ FLDVIRAAEN ANVYHDLVRY LLMVRQKTKE PKVDSELIYA YAKIDRLGDI
1201: EEFILMPNVA NLQNVGDRLY DEALYEAAKI IFAFISNWAK LACTLVKLRQ FQGAVDAARK ANSSKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SDYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRPEKLMEHI KLFSTRLNIP KLIRACDEQQ HWKELTYLYI QYDEFDNAAT TIMNHSPEAW
1401: DHMQFKDVAV KVANVELYYK AVHFYLQEHP DLINDLLNVL ALRVDHTRVV DIMRKAGHLH LVKPYMVAVQ STNVAAVNEA LNGIHVEEED YDRLRESIDM
1501: HDNFDQIGLA QKVEKHELLE MRRIAAYIYK KAGRWKQSIA LSKKDNLYKD AMETCSQSGD RELAEELLVY FIEQKKKECF ASCLFVCYDL IRPDVVLELA
1601: WMNNMIDFAF PYLLQFIREY TGKVDDLVKD RIEALKETKA KEEEEKDVVK QQNMYAQLLP LALPAPPMPG MGGAGMGGGF AAPPPMGGMG MPPMPPFGMP
1701: PMGSY

Best Arabidopsis Sequence Match ( AT3G11130.1 )
(BLAST)

0001: MAAANAPIIM KEVLTLPSVG IGQQFITFTN VTMESDKYIC VRETAPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSRIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVAFWKWI TPKMLGLVTQ TSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERPQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYMFL LQTILRTDPQ GAVNFALMMS QMEGGCPVDY NTITDLFLQR NLIREATAFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAILANGMFS HYDRPRVAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFGFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV AECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW EKVLTEENEY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVDAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDA VWSQVAKAQL REGLVSDAIE SFIRADDTTQ FLEVIRASED TNVYDDLVRY LLMVRQKVKE PKVDSELIYA YAKIERLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWAK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMVAVQ SNNVSAVNEA LNEIYAEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGD HDLAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMIDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVMS QQNMYAQLLP LALPAPPMPG MGGGGYGPPP QMGGMPGMSG MPPMPPYGMP
1701: PMGGY

Arabidopsis Description

CHC1Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6]
SUBAcon: [plasma membrane,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.