Factsheet for VIT_16s0115g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0337g00070.t01
VIT_03s0017g00210.t01
VIT_03s0038g03250.t01
VIT_05s0020g00360.t01
VIT_05s0020g03180.t01
VIT_07s0151g01000.t01
VIT_07s0151g01010.t01
VIT_08s0007g02140.t01
VIT_08s0007g07790.t01
VIT_08s0058g00250.t01
VIT_08s0058g01360.t01
VIT_09s0002g07500.t01
VIT_10s0003g04650.t01
VIT_13s0019g04680.t01
VIT_13s0067g00550.t01
VIT_13s0067g03220.t01
VIT_13s0156g00270.t01
VIT_14s0030g01760.t01
VIT_14s0060g02070.t01
VIT_14s0171g00280.t01
VIT_16s0115g00130.t01
VIT_17s0000g01560.t01
VIT_19s0014g00220.t01
VIT_19s0027g01340.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G08530.1	VIT_07s0151g01010.t01	AT1G03140.1	21798944
AT3G08530.1	VIT_09s0002g07500.t01	AT1G52510.1	21798944
AT3G08530.1	VIT_19s0014g00220.t01	AT1G53510.1	21798944
AT3G08530.1	VIT_13s0156g00270.t01	AT2G32840.1	21798944
AT3G08530.1	VIT_10s0003g04650.t01	AT2G34720.1	21798944
AT3G08530.1	VIT_08s0058g00250.t01	AT2G38300.1	21798944
AT3G08530.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT3G08530.1	VIT_14s0171g00280.t01	AT3G01780.1	21187379
AT3G08530.1	VIT_14s0030g01760.t01	AT3G04860.1	21798944
AT3G08530.1	VIT_14s0060g02070.t01	AT3G05640.1	21798944
AT3G08530.1	VIT_00s0337g00070.t01	AT3G07440.1	21798944
AT3G08530.1	VIT_03s0017g00210.t01	AT3G08530.1	21187379
AT3G08530.1	VIT_16s0115g00130.t01	AT3G08530.1	21187379
AT3G08530.1	VIT_19s0027g01340.t01	AT3G08530.1	21187379
AT3G08530.1	VIT_03s0017g00210.t01	AT3G08530.1	21798944
AT3G08530.1	VIT_16s0115g00130.t01	AT3G08530.1	21798944
AT3G08530.1	VIT_19s0027g01340.t01	AT3G08530.1	21798944
AT3G08530.1	VIT_13s0019g04680.t01	AT3G54840.1	21798944
AT3G08530.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT3G08530.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944
AT3G08530.1	VIT_17s0000g01560.t01	AT4G24840.1	21798944
AT3G08530.1	VIT_03s0038g03250.t01	AT4G35250.1	21798944
AT3G08530.1	VIT_13s0067g03220.t01	AT5G05190.1	21798944
AT3G08530.1	VIT_05s0020g00360.t01	AT5G30490.1	21798944
AT3G11130.1	VIT_13s0067g00550.t01	AT2G40060.1	24529374
AT3G11130.1	VIT_03s0017g00210.t01	AT3G08530.1	24529374
AT3G11130.1	VIT_16s0115g00130.t01	AT3G08530.1	24529374
AT3G11130.1	VIT_19s0027g01340.t01	AT3G08530.1	24529374
AT3G11130.1	VIT_08s0007g02140.t01	AT3G51890.1	24529374
AT3G11130.1	VIT_08s0058g01360.t01	AT3G52850.1	16905657

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0027g01340.t01	Wine grape	cytosol	72.41	27.36
Os12t0104766-00	Rice	plasma membrane	56.03	11.25
Os11t0104866-00	Rice	plasma membrane	56.03	11.25
VIT_13s0067g01290.t01	Wine grape	extracellular	73.28	4.99
Bra034166.1-P	Field mustard	cytosol	60.34	4.83
Bra001391.1-P	Field mustard	cytosol	60.34	4.82
Bra001286.1-P	Field mustard	cytosol	61.21	4.78
Bra034864.1-P	Field mustard	cytosol	59.48	4.64
Bra029698.1-P	Field mustard	cytosol	54.31	4.26
KRG97711	Soybean	endoplasmic reticulum, nucleus	62.07	4.24
KRH31163	Soybean	endoplasmic reticulum	62.07	4.24
AT3G08530.1	Thale cress	cytosol, plasma membrane, plastid	61.21	4.17
AT3G11130.1	Thale cress	cytosol, plasma membrane	61.21	4.16
Solyc06g051310.2.1	Tomato	nucleus	60.34	4.12
TraesCS4D01G130900.1	Wheat	golgi, unclear	60.34	4.08
TraesCS4A01G182300.1	Wheat	extracellular, golgi	60.34	4.08
KRH14933	Soybean	nucleus	59.48	4.06
Solyc05g052510.2.1	Tomato	nucleus, plastid	59.48	4.04
KRH73205	Soybean	nucleus	59.48	4.04
TraesCS4B01G136100.2	Wheat	golgi, unclear	60.34	4.04
KXG22761	Sorghum	plastid	59.48	4.04
Solyc03g096000.2.1	Tomato	nucleus	58.62	4.0
VIT_06s0004g06860.t01	Wine grape	cytosol, plastid	58.62	3.99
TraesCS5B01G152300.1	Wheat	unclear	58.62	3.98
EES07849	Sorghum	plastid	58.62	3.98
HORVU4Hr1G024710.4	Barley	plastid	60.34	3.93
TraesCS5A01G153500.1	Wheat	golgi, unclear	57.76	3.92
TraesCS5D01G158800.1	Wheat	plastid	57.76	3.92
HORVU5Hr1G048010.1	Barley	plastid	57.76	3.72
Zm00001d021067_P001	Maize	cytosol, mitochondrion	2.59	0.68
Os11t0104900-00	Rice	plasma membrane	2.59	0.43
VIT_03s0017g00210.t01	Wine grape	cytosol, extracellular	0.0	0.0
Os12t0104800-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.110	MapMan:35.1	EMBL:AM448727	ProteinID:CAN78712	ProteinID:CAN78712.1	ProteinID:CCB49976
ProteinID:CCB49976.1	InterPro:Clathrin_H-chain_N	UniProt:F6HCN1	EMBL:FN595518	GO:GO:0003674	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005886
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030130
GO:GO:0030132	InterPro:IPR016025	PANTHER:PTHR10292	PANTHER:PTHR10292:SF1	SUPFAM:SSF50989	UniParc:UPI00021092B3
ArrayExpress:VIT_16s0115g00130	EnsemblPlantsGene:VIT_16s0115g00130	EnsemblPlants:VIT_16s0115g00130.t01	:	:	:

Description

No Description!

Coordinates

chr16:-:3680129..3680747

Molecular Weight (calculated)

12734.9 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.203

Length

116 amino acids

Sequence
(BLAST)

001: MQLFSVEQHR SQALETQAAS FATCKVPGND QSCALIGFAT ISFNAGQIVS KLHVIELGSN SRELGFTEKQ ADLFFSPDFT DDFPAAMQIS HEYDFTHLFG
101: QNIKRLEGSH GGTMST

Best Arabidopsis Sequence Match ( AT3G08530.1 )
(BLAST)

0001: MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE
0101: AKAKLKSHQM PEQVVFWKWI TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS PERQQLVKGN MQLFSVDQQR
0201: SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
0301: ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES
0401: PQGILRTPDT VAKFQSVPVQ AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV KTVDNDLALK IYIKARATPK
0501: VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
0601: INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC
0701: KEYCEQLGVD ACIKLFEQFK SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA KLPDARPLIN VCDRFSFVPD
0801: LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
0901: NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE
1001: QVSAAVKAFM TADLPHELIE LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE EAFAIFKKFN LNVQAVNVLL
1101: DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201: EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV
1301: SEYYQNRGCF NELISLMESG LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI QYDEFDNAAT TVMNHSPEAW
1401: EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501: HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA
1601: WINNMMDFAF PYLLQFIREY SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP PQMGGMPGMP PMPPYGMPPM
1701: GGY

Arabidopsis Description

CHC2Clathrin heavy chain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WLB5]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.