Factsheet for VIT_08s0058g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_07s0129g01050.t01
VIT_10s0003g04670.t01
VIT_10s0042g01070.t01
VIT_16s0098g00600.t01
VIT_18s0001g09850.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	VIT_07s0129g01050.t01	AT2G23290.1	21798944
AT2G38300.1	VIT_18s0001g09850.t01	AT2G23290.1	21798944
AT2G38300.1	VIT_10s0003g04670.t01	AT2G34710.1	21798944
AT2G38300.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944
AT2G38300.1	VIT_10s0042g01070.t01	AT4G19700.1	21798944
AT2G38300.1	VIT_16s0098g00600.t01	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g01380.t01	Wine grape	mitochondrion	39.66	60.53
VIT_12s0028g00980.t01	Wine grape	nucleus	37.07	59.72
Solyc09g005030.1.1	Tomato	nucleus	63.79	50.68
VIT_00s1624g00010.t01	Wine grape	nucleus	43.1	40.65
VIT_06s0004g07000.t01	Wine grape	nucleus	55.17	36.16
Os11t0106100-00	Rice	nucleus	49.14	26.76
VIT_12s0028g02080.t01	Wine grape	nucleus	54.31	26.03
KRH75999	Soybean	nucleus	71.55	24.2
KRH49433	Soybean	nucleus	75.0	23.77
KRH65638	Soybean	nucleus	70.69	23.7
KRH00305	Soybean	nucleus	74.14	23.31
PGSC0003DMT400068508	Potato	nucleus	64.66	22.94
Solyc10g076460.1.1	Tomato	nucleus	59.48	22.85
PGSC0003DMT400041071	Potato	nucleus	57.76	22.19
AT2G38300.1	Thale cress	nucleus	58.62	20.0
Bra005124.1-P	Field mustard	nucleus	57.76	19.88
GSMUA_Achr7P22410_001	Banana	nucleus	56.9	19.88
CDX74898	Canola	nucleus	57.76	19.59
CDX91442	Canola	nucleus	57.76	19.14
Os12t0105600-01	Rice	nucleus	47.41	17.52
TraesCS5D01G158300.1	Wheat	nucleus	47.41	16.98
TraesCS5A01G153000.1	Wheat	nucleus	47.41	16.87
Zm00001d005087_P001	Maize	nucleus	50.0	16.67
TraesCS5B01G151800.1	Wheat	nucleus	47.41	16.32
TraesCS4D01G131500.1	Wheat	nucleus	47.41	16.13
TraesCS4A01G180900.1	Wheat	nucleus	47.41	16.13
VIT_01s0137g00050.t01	Wine grape	nucleus	41.38	15.84
EES15503	Sorghum	nucleus	49.14	15.57
VIT_13s0067g01500.t01	Wine grape	extracellular, vacuole	62.93	15.56
EES09087	Sorghum	nucleus	48.28	15.43
TraesCS4B01G136900.1	Wheat	nucleus	43.97	15.04
VIT_18s0001g11390.t01	Wine grape	nucleus	37.93	13.37
VIT_16s0039g01900.t01	Wine grape	nucleus	37.07	13.31
VIT_02s0012g01940.t01	Wine grape	nucleus	38.79	12.23
VIT_04s0043g00340.t01	Wine grape	nucleus	38.79	9.64

Protein Annotations

Gene3D:1.10.10.60	MapMan:35.1	ProteinID:CCB44827	ProteinID:CCB44827.1	UniProt:F6GXU7	EMBL:FN594967
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000210A911	ArrayExpress:VIT_08s0058g00250	EnsemblPlantsGene:VIT_08s0058g00250	EnsemblPlants:VIT_08s0058g00250.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:9038782..9039526

Molecular Weight (calculated)

13114.3 Da

IEP (calculated)

6.886

GRAVY (calculated)

-1.042

Length

116 amino acids

Sequence
(BLAST)

001: MEESHCAEGS KTSPSEQNED EDESEENDSE GKHKNCRSSS NSTVEENEKK GHSGAVRPYV RSKMPRLRWT PDLHLRFVHA VERLGGQERA TPKLVLQLMN
101: IKGLNIAHVK SHLQVI

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.