Factsheet for VIT_18s0001g09850.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0208g00020.t01
VIT_03s0091g00480.t01
VIT_05s0020g03180.t01
VIT_05s0020g04420.t01
VIT_06s0009g01910.t01
VIT_07s0141g00610.t01
VIT_07s0151g01000.t01
VIT_07s0205g00030.t01
VIT_08s0007g02790.t01
VIT_08s0007g07790.t01
VIT_08s0040g00470.t01
VIT_08s0056g00160.t01
VIT_14s0219g00290.t01
VIT_15s0045g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23290.1	VIT_03s0091g00480.t01	AT1G49850.1	21798944
AT2G23290.1	VIT_07s0141g00610.t01	AT2G30580.1	21798944
AT2G23290.1	VIT_06s0009g01910.t01	AT2G41090.1	17360592
AT2G23290.1	VIT_08s0040g00470.t01	AT2G41090.1	17360592
AT2G23290.1	VIT_06s0009g01910.t01	AT2G41100.1	17360592
AT2G23290.1	VIT_08s0040g00470.t01	AT2G41100.1	17360592
AT2G23290.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT2G23290.1	VIT_14s0219g00290.t01	AT3G01690.1	21798944
AT2G23290.1	VIT_00s0208g00020.t01	AT3G09630.1	21798944
AT2G23290.1	VIT_15s0045g00110.t01	AT3G09630.1	21798944
AT2G23290.1	VIT_08s0007g02790.t01	AT3G11590.1	21798944
AT2G23290.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT2G23290.1	VIT_05s0020g03180.t01	AT4G02770.1	21798944
AT2G23290.1	VIT_07s0151g01000.t01	AT4G02770.1	21798944
AT2G23290.1	VIT_05s0020g04420.t01	AT4G14640.1	17360592
AT2G23290.1	VIT_06s0009g01910.t01	AT5G21274.1	17360592
AT2G23290.1	VIT_08s0040g00470.t01	AT5G21274.1	17360592
AT2G23290.1	VIT_07s0205g00030.t01	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0129g01050.t01	Wine grape	nucleus	64.86	65.06
PGSC0003DMT400008569	Potato	nucleus	62.62	61.25
Solyc04g078420.1.1	Tomato	nucleus	62.94	60.06
CDY22442	Canola	nucleus	51.76	58.91
CDY44045	Canola	nucleus	51.12	56.14
Zm00001d005300_P001	Maize	nucleus	50.16	55.09
CDX75635	Canola	nucleus	52.08	54.52
Bra032176.1-P	Field mustard	nucleus	50.8	54.45
CDY38933	Canola	nucleus	50.8	54.45
Bra017813.1-P	Field mustard	nucleus	45.69	53.96
CDY29542	Canola	nucleus	45.69	53.96
CDX72621	Canola	nucleus	45.37	53.58
CDX89554	Canola	nucleus	50.16	53.58
Bra010593.1-P	Field mustard	nucleus	51.44	52.79
CDX69287	Canola	nucleus	51.44	52.61
Os09t0106700-01	Rice	nucleus	53.35	52.35
VIT_03s0180g00210.t01	Wine grape	nucleus	50.48	52.15
Zm00001d019712_P001	Maize	nucleus	56.55	51.3
PGSC0003DMT400064306	Potato	mitochondrion, nucleus	59.74	50.4
AT4G37260.1	Thale cress	nucleus	51.44	50.31
AT2G23290.1	Thale cress	nucleus	49.52	50.16
Solyc02g092930.1.1	Tomato	nucleus	57.83	50.14
Bra011749.1-P	Field mustard	nucleus	52.08	49.7
TraesCS5B01G157300.1	Wheat	nucleus	53.04	49.55
EER98550	Sorghum	nucleus	56.87	48.63
TraesCS5A01G159600.1	Wheat	nucleus	52.08	48.51
TraesCS5D01G164600.1	Wheat	nucleus	52.4	47.81
VIT_18s0001g11170.t01	Wine grape	nucleus	31.31	42.79
VIT_13s0067g01360.t01	Wine grape	nucleus	33.55	41.5
HORVU5Hr1G049880.1	Barley	plastid	51.76	38.21
VIT_17s0000g01890.t01	Wine grape	nucleus	21.09	29.86
VIT_13s0019g03200.t01	Wine grape	nucleus	33.87	28.04
VIT_08s0007g01540.t01	Wine grape	nucleus	35.14	26.83
VIT_18s0001g15260.t01	Wine grape	nucleus	23.64	23.05
VIT_04s0044g01380.t01	Wine grape	nucleus	22.04	22.85
VIT_01s0026g02600.t01	Wine grape	nucleus	25.56	17.51
VIT_08s0056g01190.t01	Wine grape	golgi	23.96	16.82
VIT_14s0108g01010.t01	Wine grape	nucleus	21.73	14.29

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100243698	wikigene:100243698	MapMan:15.5.2.1	EMBL:AM467461	ProteinID:CAN81361
ProteinID:CAN81361.1	ProteinID:CCB45801	ProteinID:CCB45801.1	UniProt:F6GZY0	EMBL:FN595227	GO:GO:0000981
GO:GO:0001135	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006357
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030154	GO:GO:0043565
GO:GO:0044212	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100243698	wikigene:LOC100243698	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641	PANTHER:PTHR10641:SF940	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	TIGR:TC65319	UniParc:UPI0001985302	ArrayExpress:VIT_18s0001g09850	EnsemblPlantsGene:VIT_18s0001g09850	EnsemblPlants:VIT_18s0001g09850.t01
unigene:Vvi.2288	RefSeq:XP_002285015	RefSeq:XP_002285015.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:8236522..8237734

Molecular Weight (calculated)

34209.8 Da

IEP (calculated)

9.352

GRAVY (calculated)

-0.518

Length

313 amino acids

Sequence
(BLAST)

001: MASSKKDLDR IKGPWSPEED EALQRLVQKH GPRNWSLISK SIPGRSGKSC RLRWCNQLSP QVEHRAFTPE EDATIIRAHA RFGNKWATIA RLLVGRTDNA
101: IKNHWNSTLK RKCSSITEDM IADGHAQPPL KRSASVGAGT TVSGHNLSPS SPSGSEFSDS SAPGMASSLV YRPVPRTGPI VLPTQKIEAA SSTNDPPTSL
201: SLSLPGSDSC EVSNHLSGSD HVKIQNQILQ SPAIPPVQLQ QNPGSPRNIQ NCELGLGMSE KPFFTPEFLA VMQEMIRKEV RNYMSGMEQN GLCLQTEAIW
301: NAVMKRIGIG KIE

Best Arabidopsis Sequence Match ( AT5G67300.1 )
(BLAST)

001: MADRIKGPWS PEEDEQLRRL VVKYGPRNWT VISKSIPGRS GKSCRLRWCN QLSPQVEHRP FSAEEDETIA RAHAQFGNKW ATIARLLNGR TDNAVKNHWN
101: STLKRKCGGY DHRGYDGSED HRPVKRSVSA GSPPVVTGLY MSPGSPTGSD VSDSSTIPIL PSVELFKPVP RPGAVVLPLP IETSSSSDDP PTSLSLSLPG
201: ADVSEESNRS HESTNINNTT SSRHNHNNTV SFMPFSGGFR GAIEEMGKSF PGNGGEFMAV VQEMIKAEVR SYMTEMQRNN GGGFVGGFID NGMIPMSQIG
301: VGRIE

Arabidopsis Description

MYB44MYBR1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQ74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.