Factsheet for VIT_00s0208g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0179g00350.t01
VIT_01s0011g04080.t01
VIT_05s0020g04480.t01
VIT_06s0004g06590.t01
VIT_06s0080g00930.t01
VIT_09s0002g02400.t01
VIT_16s0098g00600.t01
VIT_17s0000g03210.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G09630.1	VIT_01s0011g04080.t01	AT1G17970.1	21798944
AT3G09630.1	VIT_17s0000g03210.t01	AT1G17970.1	21798944
AT3G09630.1	VIT_09s0002g02400.t01	AT3G13720.1	21798944
AT3G09630.1	VIT_00s0179g00350.t01	AT3G22960.1	21798944
AT3G09630.1	VIT_05s0020g04480.t01	AT3G22960.1	21798944
AT5G02870.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT5G02870.1	VIT_06s0080g00930.t01	AT5G22310.1	21798944
AT5G02870.1	VIT_06s0004g06590.t01	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0045g00110.t01	Wine grape	cytosol	38.66	68.49
VIT_13s0067g03350.t01	Wine grape	cytosol	34.28	40.43
Solyc10g084350.1.1	Tomato	nucleus	20.62	38.84
VIT_02s0087g00870.t01	Wine grape	cytosol	11.6	36.59
VIT_08s0040g03200.t01	Wine grape	cytosol	36.08	34.48
VIT_06s0004g00360.t01	Wine grape	cytosol	34.54	33.09
PGSC0003DMT400028707	Potato	cytosol	32.22	31.97
Solyc09g007250.2.1	Tomato	nucleus	32.22	30.79
PGSC0003DMT400071725	Potato	cytosol	32.22	30.79
PGSC0003DMT400045381	Potato	cytosol	32.22	30.71
CDY11231	Canola	cytosol	30.93	30.61
Bra034075.1-P	Field mustard	cytosol	30.67	30.59
CDY41301	Canola	cytosol	30.67	30.43
CDY22192	Canola	cytosol	30.67	30.43
AT3G09630.1	Thale cress	cytosol	31.19	29.8
CDX80842	Canola	cytosol	30.93	29.56
CDX70339	Canola	cytosol	30.93	29.56
Bra009560.1-P	Field mustard	cytosol	30.93	29.56
Bra005749.1-P	Field mustard	cytosol	30.93	29.56
AT5G02870.1	Thale cress	cytosol	30.93	29.48
CDY10418	Canola	cytosol	30.67	29.24
Solyc10g086010.1.1	Tomato	extracellular	32.22	28.74
CDY41596	Canola	cytosol	29.9	28.57
CDY44721	Canola	cytosol, extracellular	29.9	28.57
CDX73989	Canola	cytosol	29.9	28.57
Bra001302.1-P	Field mustard	cytosol	29.9	28.57
Bra029780.1-P	Field mustard	cytosol	29.38	28.08
Bra006658.1-P	Field mustard	plastid	3.87	15.15
CDY07934	Canola	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid	29.38	14.63
VIT_13s0067g03340.t01	Wine grape	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:17.1.2.1.2	MapMan:19.2.3.3.1.4	Gene3D:3.40.1370.10	ProteinID:CCB52608	ProteinID:CCB52608.1	UniProt:F6HJL2
EMBL:FN595783	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022625	InterPro:IPR023574	PFAM:PF00573	PANTHER:PTHR19431
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	SUPFAM:SSF52166	UniParc:UPI00021090D6	ArrayExpress:VIT_00s0208g00020	EnsemblPlantsGene:VIT_00s0208g00020
EnsemblPlants:VIT_00s0208g00020.t01	RefSeq:XP_003635093	RefSeq:XP_003635093.1	:	:	:

Description

No Description!

Coordinates

chrUn:+:12614545..12619986

Molecular Weight (calculated)

43827.7 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.109

Length

388 amino acids

Sequence
(BLAST)

001: MARGHRIESV PELPLVIGDS AESVEKTSAA IDILKQFDAY LDTEKAKDSH AIHPGKGKMR NRRYISRKGP LIVYGMEGAK LVKAFRNIPG VEVANVDRLN
101: LLKLAPGGHL GRFVIWTKSS FEKLDSIYRS FEKKLRRRRM GTCCPVKKWL MLIWLGILNS VLSPLACLNL RPRNQDLGLP IPASMHPTLP GFSLAASPPP
201: KWSFLKITLE TNCMFGSRRP KRKLLIIPLL RFSHGVSFED QVLVIREKLA ELYESEQQWS RAAQMLSGMD LDSTMRVIDD TLRLSKCVQI ARLYLEDDDA
301: VNAEAFINKA SFLVSNSQHE VLNLQYKVCY ARILDLKRKF LEAALRYYDI SHIEKLQIGD ELIDEEALEQ ALSAVVSCTI LVAAGSYN

Best Arabidopsis Sequence Match ( AT5G42970.1 )
(BLAST)

001: MDEALTNASA IGDQRQKIEQ YKLILSSVLS SNDLLQAQRF IDHILSDDVP LVVSRQLLQS FAQELGRLEP ETQKEIAQFT LTQIQPRVVS FEEQALVIRE
101: KLAGLYESEQ EWSKAAQMLS GIDLDSGMRA VDDNFKLSKC IQIARLYLED DDAVNAEAFI NKASFLVSNS QNEVLNLQYK VCYARILDMK RKFLEAALRY
201: YGISQIEQRQ IGDEEIDENA LEQALSAAVT CTILAGAGPQ RSRVLATLYK DERCSKLKIY PILQKVYLER ILRRPEIDAF SEELRPHQKA SLPDKSTVLD
301: RAMIEHNLLS ASKLYTNIRF DELGTLLAID PRKAEKIAAN MIGQDRMRGS IDQEEAVIHF EDDVEELQQW DQQISGLCQA LNDILDGMAK KGMSVPV

Arabidopsis Description

CSN4At5g42970 [Source:UniProtKB/TrEMBL;Acc:Q1H5B6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.