Factsheet for VIT_17s0000g03210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41763	Soybean	nucleus	57.68	56.76
Solyc03g118840.2.1	Tomato	nucleus	57.41	55.04
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	15.09	54.9
PGSC0003DMT400014732	Potato	nucleus	56.87	54.38
KRH48568	Soybean	nucleus	50.94	53.39
TraesCS3D01G260700.1	Wheat	nucleus	28.03	52.0
VIT_07s0031g00380.t01	Wine grape	cytosol	9.7	51.43
KRH39137	Soybean	nucleus	50.94	51.22
KRH60461	Soybean	nucleus	56.87	48.96
Solyc12g040390.1.1	Tomato	nucleus, plastid	39.62	48.2
VIT_01s0011g04080.t01	Wine grape	nucleus	45.55	48.15
VIT_11s0118g00640.t01	Wine grape	nucleus	15.36	47.9
TraesCS3B01G293600.1	Wheat	nucleus	43.4	46.94
TraesCS3A01G260500.1	Wheat	nucleus	42.59	45.8
OQU87370	Sorghum	nucleus	42.59	45.27
CDY11092	Canola	cytosol, plastid	42.32	45.11
Zm00001d011636_P001	Maize	nucleus	40.97	44.97
Bra003830.1-P	Field mustard	nucleus, plastid	40.97	44.84
CDX68213	Canola	nucleus, plastid	42.05	44.7
PGSC0003DMT400078539	Potato	plastid	29.92	44.58
CDX73013	Canola	plastid	42.32	44.23
Zm00001d043784_P002	Maize	nucleus	41.24	44.22
AT1G73760.1	Thale cress	nucleus, plastid	43.67	44.14
GSMUA_Achr4P11130_001	Banana	nucleus, plastid	39.35	43.71
CDY60141	Canola	plastid	42.05	43.7
Bra015967.1-P	Field mustard	nucleus	42.05	43.7
GSMUA_Achr9P21480_001	Banana	plastid	39.89	43.53
CDX83878	Canola	nucleus	41.51	43.14
CDX96741	Canola	nucleus	42.05	42.86
Bra016574.1-P	Field mustard	nucleus	41.24	42.74
Solyc05g008840.1.1	Tomato	nucleus, plastid	25.07	42.27
VIT_07s0031g00370.t01	Wine grape	mitochondrion	16.44	42.07
GSMUA_Achr3P29390_001	Banana	golgi, plastid	42.32	41.32
HORVU3Hr1G064370.1	Barley	plastid	42.59	41.04
VIT_16s0022g00290.t01	Wine grape	nucleus	8.36	40.79
AT1G17970.1	Thale cress	nucleus	38.54	38.86
TraesCS1B01G393400.2	Wheat	nucleus	36.12	38.51
TraesCS1A01G373200.1	Wheat	nucleus	36.12	38.4
TraesCS1D01G380000.2	Wheat	nucleus	35.31	37.86
Os05t0550000-00	Rice	nucleus	36.93	37.64
GSMUA_Achr1P23200_001	Banana	nucleus	35.85	36.94
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	36.12	35.64
Zm00001d038909_P001	Maize	cytosol, mitochondrion	36.66	35.42
HORVU1Hr1G082970.1	Barley	plastid	32.88	32.36
VIT_07s0031g00440.t01	Wine grape	nucleus	18.87	31.82
AT4G00070.1	Thale cress	nucleus	13.21	27.37
VIT_07s0031g00390.t01	Wine grape	nucleus	15.36	23.36
VIT_12s0028g01220.t01	Wine grape	nucleus	12.67	21.46
VIT_18s0001g02280.t01	Wine grape	nucleus	11.86	21.26
VIT_06s0004g01930.t01	Wine grape	nucleus	12.94	19.05
VIT_13s0064g01030.t01	Wine grape	nucleus	12.4	18.62
AT1G36950.1	Thale cress	cytosol	10.78	17.7
VIT_04s0008g02390.t01	Wine grape	nucleus	25.07	16.91
VIT_10s0042g00580.t01	Wine grape	nucleus	12.94	15.58
VIT_19s0014g01850.t01	Wine grape	nucleus	21.29	14.68
VIT_08s0040g02160.t01	Wine grape	nucleus	21.02	14.29
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	14.82	13.99
VIT_18s0001g10260.t01	Wine grape	nucleus	26.42	13.35
VIT_03s0097g00680.t01	Wine grape	nucleus	14.82	13.06
VIT_13s0019g04100.t01	Wine grape	extracellular	19.68	12.92
VIT_03s0063g00160.t01	Wine grape	nucleus	24.8	12.53
VIT_03s0088g01090.t01	Wine grape	nucleus	15.36	12.47

Protein Annotations

EntrezGene:100245764	wikigene:100245764	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM473081	ProteinID:CAN83633
ProteinID:CAN83633.1	ProteinID:CCB43242	ProteinID:CCB43242.1	UniProt:F6GTP6	EMBL:FN594950	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100245764	wikigene:LOC100245764	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF96	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC55487	UniParc:UPI0001984FA9	ArrayExpress:VIT_17s0000g03210
EnsemblPlantsGene:VIT_17s0000g03210	EnsemblPlants:VIT_17s0000g03210.t01	unigene:Vvi.6525	RefSeq:XP_002279751	RefSeq:XP_002279751.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:-:3094227..3100434

Molecular Weight (calculated)

40804.1 Da

IEP (calculated)

8.433

GRAVY (calculated)

-0.631

Length

371 amino acids

Sequence
(BLAST)

001: MPVVAEGSTV AEHIRLRRPR SQPIPDTDPN PQIPSIIQST RCKSSISSLL LSTFSNTNAN TNEGSNNTSG GRKKNFASAK FRGLGCAASS QVSVPAVIRT
101: SADWQAKKVR KKKQRSLQQQ QQQQKKSGNK GVNAVAPNPP AASVECVVPD VWCAPGIGFS ADAASVDCVV ARRPASGRGK VDGDKINQRE RASCPTRRAT
201: NSEHISFHDS DPTIGMMRPG SDVFGPRYYR HVRHRSPEGL AEIVLFESNF LMGGRSNGHD RYRDWRLDVD NMSYEELLEL GDRIGYVSTG LQEDEIGRCL
301: RKSKLSILDE LSAHLPTELD WKCSICQEEY EADDEMGKLE CGHGYHIDCI KQWLGQKNSC PVCKATAAAQ C

Best Arabidopsis Sequence Match ( AT1G73760.1 )
(BLAST)

001: MPVSAEPSSS SSTTIGQHMR LQRPRNHRNL PPISTADEPL IPKPSRVSKS AMSSFFLLPE TTKKKPNGTA SFRGLGCTTS ASQQVSVPAV IRSSADWDAS
101: NFKIKKTKKK NKNKGSSSYN GGSIKILSEA STSSSVACAA IPDVWCGPGV GFSTDAVVGG SIDTVVSDPP RRNIPVRRKI DGDKTNSNSN NHREGSSSLL
201: PRRSLNQESN PYFDSDSSFL TSRAEQTDRY HRHLRLPYPD GLAEMMMMQN GFVMGGVLSS FDQFRDMRLN VDNMTYEQLL ELGERIGHVN TGLTEKQIKS
301: CLRKVKPCRQ DTTVADRKCI ICQDEYEAKD EVGELRCGHR FHIDCVNQWL VRKNSCPVCK TMAYNKS

Arabidopsis Description

Putative RING zinc finger protein; 69105-67310 [Source:UniProtKB/TrEMBL;Acc:Q9C9T6]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.