Factsheet for VIT_08s0040g02160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG95955	Soybean	nucleus	63.74	63.39
VIT_16s0022g00290.t01	Wine grape	nucleus	8.79	63.16
KRH32434	Soybean	nucleus	60.44	61.22
KRH67668	Soybean	nucleus	61.72	61.16
KRH19845	Soybean	nucleus	61.36	60.91
GSMUA_AchrUn_...	Banana	nucleus	12.27	59.82
PGSC0003DMT400004449	Potato	nucleus	57.88	58.3
Solyc09g007530.2.1	Tomato	nucleus	56.78	57.2
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	9.71	51.96
VIT_13s0019g04100.t01	Wine grape	extracellular	48.53	46.9
VIT_07s0031g00380.t01	Wine grape	cytosol	5.86	45.71
VIT_07s0031g00370.t01	Wine grape	mitochondrion	11.36	42.76
VIT_11s0118g00640.t01	Wine grape	nucleus	9.16	42.02
GSMUA_Achr5P08460_001	Banana	nucleus	35.53	33.8
VIT_19s0014g01850.t01	Wine grape	nucleus	27.11	27.51
VIT_07s0031g00440.t01	Wine grape	nucleus	10.81	26.82
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	19.23	26.72
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome	24.73	26.37
VIT_07s0031g00390.t01	Wine grape	nucleus	11.36	25.41
VIT_06s0004g01930.t01	Wine grape	nucleus	11.54	25.0
VIT_12s0028g01220.t01	Wine grape	nucleus	9.89	24.66
VIT_03s0088g01090.t01	Wine grape	nucleus	20.33	24.29
VIT_03s0097g00680.t01	Wine grape	nucleus	18.68	24.23
EES00281	Sorghum	nucleus	22.53	23.88
VIT_18s0001g02280.t01	Wine grape	nucleus	8.97	23.67
Zm00001d008649_P003	Maize	cytosol	22.71	23.53
Os01t0159300-01	Rice	nucleus	21.25	23.15
VIT_13s0064g01030.t01	Wine grape	nucleus	10.44	23.08
VIT_01s0011g04080.t01	Wine grape	nucleus	14.47	22.51
Zm00001d039769_P002	Maize	cytosol	22.53	22.32
EES19093	Sorghum	nucleus	20.88	21.19
VIT_10s0042g00580.t01	Wine grape	nucleus	11.9	21.1
TraesCS3B01G120600.2	Wheat	cytosol	19.96	21.04
VIT_17s0000g03210.t01	Wine grape	nucleus	14.29	21.02
Os05t0163400-03	Rice	nucleus	20.51	21.01
TraesCS1A01G107600.1	Wheat	nucleus	20.51	20.86
TraesCS3D01G105300.1	Wheat	cytosol	19.78	20.85
TraesCS3A01G103000.1	Wheat	nucleus	19.78	20.81
TraesCS1D01G111500.1	Wheat	nucleus	20.33	20.71
TraesCS1B01G129600.1	Wheat	nucleus	20.15	20.6
HORVU1Hr1G024190.2	Barley	nucleus	20.15	20.48
VIT_18s0001g10260.t01	Wine grape	nucleus	25.09	18.66
HORVU3Hr1G018800.2	Barley	cytosol, plastid	19.78	18.34
VIT_04s0008g02390.t01	Wine grape	nucleus	17.95	17.82
VIT_03s0063g00160.t01	Wine grape	nucleus	23.26	17.3
Bra028576.1-P	Field mustard	cytosol	5.86	11.31
CDY47948	Canola	nucleus	10.26	11.13
Bra036336.1-P	Field mustard	nucleus	10.26	11.13

Protein Annotations

EntrezGene:100263731	wikigene:100263731	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM448319	ProteinID:CAN80846
ProteinID:CAN80846.1	ProteinID:CBI32710	ProteinID:CBI32710.3	UniProt:D7TQJ0	EMBL:FN596008	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100263731	wikigene:LOC100263731	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF47	SMART:SM00184	SUPFAM:SSF57850	TIGR:TC55920	TIGR:TC64022	UniParc:UPI0001983D28
ArrayExpress:VIT_08s0040g02160	EnsemblPlantsGene:VIT_08s0040g02160	EnsemblPlants:VIT_08s0040g02160.t01	unigene:Vvi.785	RefSeq:XP_002280200	RefSeq:XP_002280200.1
RefSeq:XP_010653546.1	RefSeq:XP_010653547.1	RefSeq:XP_010653550.1	RefSeq:XP_010653551.1	RefSeq:XP_010653552.1	RefSeq:XP_019077151.1
RefSeq:XP_019077152.1	RefSeq:XP_019077153.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:13268900..13272455

Molecular Weight (calculated)

60421.7 Da

IEP (calculated)

6.750

GRAVY (calculated)

-0.758

Length

546 amino acids

Sequence
(BLAST)

001: MGHRHLYNTS QMFEGDHDQT WNHMNADQPY LARAGVAENV SLIYPVENMT IDGGHYSSHW NPPPRPNVYS SSGHNVEVPH YQQDALGPSR DPFLHLPAAG
101: TFPMGPENYA HHASSSNYDR QTFHGMDNGF VDLTMGNGRG PYKRKSPGIP SVFERGSTSR FYSAGSSSDL SVSADLRQEK PNADSQNMPW DHINMSPGYR
201: GSGLSIGGEG SLRNVRSRSA LDLESNLART HLSGNPSRHS YSASHPMDYS SSVDLSSQSS NSSSREWNHI LSPAHGRTPV SDTSGLSHET NHFPLGSCTT
301: NAPVEFGGYN HDFIPSRNPI VPQSLHGTSN QSVRGVRTSY SQRSTPTSRA SSSNSRLGHP TTDEGLQLVA ENYSSRHSRP FSTVGWRNSD RNGRSRISNE
401: RFRSLSDEAG VRERLASEGL MIVDRSALYG SRNLFDQHRE MRLDVDNMSY EELLALGERI GNVNTGLSED MMSKCLTETI YCSSDQLQEE GACVICLDEY
501: KNMDDVGTLS ACRHDYHVDC IKKWLLMKNS CPICKAPALP DHMKGI

Best Arabidopsis Sequence Match ( AT2G37150.10 )
(BLAST)

001: MGHRHFLGSS QFFDDEHDQG WNHTHPEHPY SSQATSGTSE NRSHVYPAEN MLNEGMPVSS HWNSSPGPNA YTDSGHSVER PHYNPGVSGP SHDPSVNSTV
101: PTFSAPHENY VTFASSSSYN SQTWSNASYV DHQSMESVRG AQKRKRPCPS SIYEMGSSSQ YHGDRTPADT HFPSELHLGK SITHDHDPHY MPWLMNPTYR
201: SNNLSIRGES SSRNVRSRPT LDSETSLGRN NLPRSLSLDS HSTHHHSVDH YGSGQFPGQT SHGNKDWNCA RLSPVLRDIN GFSPETNNFL PARSVVNSLS
301: VNTSGYHHHE LTGNRNPTVS HGVPGTSTLS TSSSRFSHRS TSTYRSSSHG SRSGHVASSS GDRSHLVTET YPSRHLRPPP HISWRSGDRP GRRRSSYERF
401: QPPFDEVALH ERFSSEEFMV EDRQPQYYGS RNMLDHHRDM RLDIDNMSYE ELLDLGERIG SVNTGLSDSA ISSCLLATMY YPSYQTEEQR KCAICLEEYK
501: EKEELGEVKG CGHDYHGRCI KKWLSMKNSC PICKSPALPD ASKNSS

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IQ07]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.