Factsheet for VIT_03s0063g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400079217	Potato	cytosol	8.99	66.67
GSMUA_Achr4P06090_001	Banana	cytosol	11.99	59.86
VIT_07s0031g00400.t01	Wine grape	cytoskeleton, cytosol, nucleus	8.31	59.8
VIT_07s0031g00380.t01	Wine grape	cytosol	5.31	55.71
VIT_11s0118g00640.t01	Wine grape	nucleus	8.72	53.78
VIT_18s0001g10260.t01	Wine grape	nucleus	50.95	50.95
KRH50319	Soybean	nucleus	47.0	48.25
Zm00001d026446_P001	Maize	cytosol	11.85	47.28
VIT_07s0031g00370.t01	Wine grape	mitochondrion	9.26	46.9
KRH70661	Soybean	mitochondrion, nucleus	45.23	45.54
AT4G34040.1	Thale cress	nucleus	38.83	42.79
CDY62314	Canola	nucleus	34.2	42.4
Bra015221.1-P	Field mustard	nucleus	34.47	42.38
CDY37230	Canola	nucleus	33.79	42.11
Bra039842.1-P	Field mustard	nucleus	33.92	41.71
Solyc01g107940.2.1	Tomato	nucleus	39.51	41.02
VIT_07s0031g00440.t01	Wine grape	nucleus	12.26	40.91
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	40.33	40.77
PGSC0003DMT400066252	Potato	nucleus	39.24	40.28
Solyc01g107930.2.1	Tomato	nucleus	38.15	39.0
VIT_16s0022g00290.t01	Wine grape	nucleus	3.81	36.84
VIT_07s0031g00390.t01	Wine grape	nucleus	11.99	36.07
GSMUA_Achr4P12850_001	Banana	nucleus	22.34	35.96
EES11547	Sorghum	nucleus	30.38	33.79
Zm00001d002080_P002	Maize	nucleus	30.52	33.79
AT2G15530.4	Thale cress	nucleus	35.69	33.59
Os04t0648800-01	Rice	nucleus	30.25	33.28
Zm00001d026445_P001	Maize	nucleus	29.29	32.82
TraesCS2B01G542200.2	Wheat	nucleus	29.56	32.39
TraesCS2D01G516000.1	Wheat	nucleus	29.43	32.29
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	25.2	32.01
TraesCS2A01G514400.3	Wheat	nucleus	29.02	31.84
HORVU2Hr1G113930.2	Barley	nucleus	28.34	31.8
GSMUA_Achr9P22530_001	Banana	nucleus	27.79	31.68
EES10483	Sorghum	nucleus	27.52	29.02
Zm00001d004300_P003	Maize	nucleus	27.38	28.96
Zm00001d025027_P002	Maize	nucleus	26.84	28.3
Os04t0185500-01	Rice	nucleus	26.98	27.93
TraesCS2B01G030700.1	Wheat	nucleus	25.34	26.53
TraesCS2A01G022100.1	Wheat	nucleus	25.2	26.39
TraesCS2D01G022900.1	Wheat	nucleus	25.2	26.39
HORVU2Hr1G003340.5	Barley	nucleus	24.8	25.78
VIT_17s0000g03210.t01	Wine grape	nucleus	12.53	24.8
VIT_18s0001g02280.t01	Wine grape	nucleus	6.95	24.64
VIT_06s0004g01930.t01	Wine grape	nucleus	8.31	24.21
VIT_13s0064g01030.t01	Wine grape	nucleus	7.9	23.48
VIT_08s0040g02160.t01	Wine grape	nucleus	17.3	23.26
VIT_01s0011g04080.t01	Wine grape	nucleus	11.04	23.08
VIT_19s0014g01850.t01	Wine grape	nucleus	16.62	22.68
VIT_04s0008g02390.t01	Wine grape	nucleus	16.48	22.0
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	11.44	21.37
VIT_03s0088g01090.t01	Wine grape	nucleus	13.08	21.01
VIT_12s0028g01220.t01	Wine grape	nucleus	6.27	21.0
VIT_03s0097g00680.t01	Wine grape	nucleus	11.72	20.43
VIT_10s0042g00580.t01	Wine grape	nucleus	8.31	19.81
VIT_13s0019g04100.t01	Wine grape	extracellular	14.31	18.58

Protein Annotations

EntrezGene:100258840	wikigene:100258840	Gene3D:3.30.40.10	MapMan:35.1	EMBL:AM467682	ProteinID:CAN68213
ProteinID:CAN68213.1	ProteinID:CCB56850	ProteinID:CCB56850.1	UniProt:F6HQ93	EMBL:FN596006	InterPro:IPR001841
InterPro:IPR013083	EntrezGene:LOC100258840	wikigene:LOC100258840	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR22937
PANTHER:PTHR22937:SF101	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0001982DC4	ArrayExpress:VIT_03s0063g00160	EnsemblPlantsGene:VIT_03s0063g00160
EnsemblPlants:VIT_03s0063g00160.t01	unigene:Vvi.5449	RefSeq:XP_002282377	RefSeq:XP_002282377.1	RefSeq:XP_010647733.1	RefSeq:XP_010647734.1
RefSeq:XP_019074523.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr3:+:3768331..3782384

Molecular Weight (calculated)

78348.8 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.523

Length

734 amino acids

Sequence
(BLAST)

001: MQGQRSTIGS FSETIDFGQG SVSNNTGMNQ QTSWNNMLNP VDSRLSNYML PSNEANFTCV NAVNHDVQNF NGWHLGESSS SMNPRNQAIN AGVRMEHGRS
101: SSGTLAGADP NLEDRRLDLA NSPLHESATS GNQITRGPLF IRGSSSTRIP LNVNLNAEIV GNSGSGGQEM GAGLCKSGGL GTEQVSPVSA SADNIGASSG
201: SSGSLIEESN GGSGSSLGSW GLSCKRKALE GTSGQSYPSG SSSCSPQAEP SAWLAVPAHS NASNSSSIST PSGNSLSVNP PGLPNQQSGI GMRGVAPSDV
301: FPSLSVTGNA ENSQRNFGRR VNPGHQQEPV AFNLSSAGIT RRSNVSSNHQ SSRPLTFSDS LDLRPSAAVA ANANAPQIAP QSQSHVLHIP GLARNMHPFP
401: WSGASNSRAG SSSRSFNFSR ERAAVLQEEA NLRSNHRNNA EHPMFIPATE TRNLAQDPTH WSLATGNIST NGGGPSTSRM GLSSSVHSLP TAWIPVHNPP
501: TSNQQRLSEI APWTLFPSIE SEAGGLSGPF SSLPSGPSAN TRETVISAGA ISQVHQQTYP RSAFLMERQG NDVLGMPHSL RALAADIEGR HRLISEIRQV
601: LTAMRRGESL RAEDYMLFDP FIYHGMSELQ DRHRDMRLDV DNMSYEELLD LEERIGDVNT GLSDEKILKC MKRQKYSSNP TPEVEPCCIC QEEYAVGDDL
701: GILDCGHDFH TNCIKQWLMQ KNLCPICKTT GLAT

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.