CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004300_P003	Maize	nucleus	92.1	92.36
Zm00001d025027_P002	Maize	nucleus	88.22	88.22
GSMUA_Achr4P06090_001	Banana	cytosol	13.65	64.63
Os04t0185500-01	Rice	nucleus	65.09	63.89
PGSC0003DMT400079217	Potato	cytosol	9.05	63.64
TraesCS2B01G030700.1	Wheat	nucleus	64.08	63.62
TraesCS2D01G022900.1	Wheat	nucleus	63.94	63.48
HORVU2Hr1G003340.5	Barley	nucleus	64.22	63.31
TraesCS2A01G022100.1	Wheat	nucleus	63.65	63.2
GSMUA_Achr4P12850_001	Banana	nucleus	22.56	34.43
Bra015221.1-P	Field mustard	nucleus	23.99	27.97
VIT_03s0063g00160.t01	Wine grape	nucleus	29.02	27.52
EES11547	Sorghum	nucleus	26.01	27.42
GSMUA_Achr9P22530_001	Banana	nucleus	25.0	27.02
CDY37230	Canola	nucleus	22.41	26.49
CDY62314	Canola	nucleus	22.41	26.35
Bra039842.1-P	Field mustard	nucleus	22.56	26.3
OQU80744	Sorghum	mitochondrion	5.32	25.69
AT4G34040.1	Thale cress	nucleus	24.43	25.53
OQU87370	Sorghum	nucleus	12.5	24.93
PGSC0003DMT400066252	Potato	nucleus	25.57	24.9
KRH50319	Soybean	nucleus	25.29	24.62
EER99218	Sorghum	nucleus	6.18	24.57
KRH70661	Soybean	mitochondrion, nucleus	25.43	24.28
Solyc01g107930.2.1	Tomato	nucleus	24.57	23.82
Solyc01g107940.2.1	Tomato	nucleus	23.99	23.62
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	23.71	22.73
EES12797	Sorghum	nucleus	12.07	22.46
EES11283	Sorghum	nucleus	7.9	22.27
AT2G15530.4	Thale cress	nucleus	24.43	21.79
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	11.64	21.54
EES00281	Sorghum	nucleus	15.09	20.39
KXG40075	Sorghum	cytosol	7.18	20.08
KXG22536	Sorghum	nucleus	14.66	20.08
OQU80147	Sorghum	nucleus	10.06	19.55
EES04530	Sorghum	nucleus	14.51	19.5
EES03404	Sorghum	nucleus	14.51	19.39
KXG20741	Sorghum	nucleus	15.8	18.64
EES19093	Sorghum	nucleus	14.22	18.4
EER97094	Sorghum	nucleus	7.9	16.98
EES15239	Sorghum	nucleus	7.47	16.56
KXG19166	Sorghum	nucleus	6.47	16.54

Protein Annotations

EnsemblPlants:EES10483	EnsemblPlantsGene:SORBI_3006G027200	EntrezGene:8067766	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF94	PFAM:PF13639	PFscan:PS50089
ProteinID:EES10483	ProteinID:EES10483.1	RefSeq:XP_002446155.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
unigene:Sbi.4280	UniParc:UPI0001A86AF6	UniProt:C5YCT6	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:+:5565961..5574339

Molecular Weight (calculated)

75778.6 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.594

Length

696 amino acids

Sequence
(BLAST)

001: MQHNRITMLS SSETCQLGSS SSNPVMDQQN LLPNNSNVDE QILLPNALEH EDYPHYLLNS HEVGMPSGSL IGQQNTSLSL WEPAGSSSMG CLVDHGNFFQ
101: AKRDHLASSL SIGGPLSIDR RRHEGTSSLP SHNLNIDLNI NQADQFGSDD VDLVHGNGQS RANTVTAHRG SFITERILHH GVSSDAIGSS SRNAECFDGA
201: AGQDSHHPAF KRKYLDGCHA ESSANGSSRN RHHNTLLPPP TTSESLTIPT ATNFNVPYPP VEQLNQSTNI AASSTLSDHY SSYSDPHANE FVRNTRMRIN
301: PSDYDQSLPS LLPEGSFRCS AYQSTQQQSS FIPVQPRQVS SSAGSHSRPH VPTVTQFSQN LHRPSSNVSF GSRIGNSSTS SGSTMPIPAS QDPSTSLLGS
401: DYPEPLLLGS SLFTADSTNF LSASGSRSNQ QNSGSSSSSM LRPAVNVGAP QVAGFNASQP STTIRGSSDV SRRSLISAGA SHSRSSSIAL QQRGTSSTSH
501: EIRSHQPGSS SRAHQQHSLR PGHSSIDRQS SGYLDLQSFM QTIASREGGR PMSEIRNVFD QIRQGRNARL EDLLLIDRSL IMRRANLIDR HREMRLDVDN
601: MSYEELLALG ERIGYVNTGL TEENIMSNMK QWKYALISLE DPPTGVEPCC ICQEDYVEGE DLGRLDCGHD FHTGCIKQWL VIKNLCPICK KTALDT

Best Arabidopsis Sequence Match ( AT4G34040.1 )
(BLAST)

001: MQGPRSTGDS STGINYADGE PICSTNSETT SNNILNPVDV QFPNNTTGSG RPTYASSSSH VVQNHNWWSF GESSSRLGPS DHLNSNGSKT DRQLLSDGYG
101: FEEGQSGMLL PGESFLRGSS SSHMLSHVNL GKDMDIGSGL QTSGVVIRHN NCETSLGSSS QTAEERSSGP GSSLGGLGSS CKRKALEGAP SHSFPGESHG
201: CFFQTENGAW NEGLAQYDAS SSLSLSMPSQ NSPNVNNQSG LPEPRFGLGG GRAVTASAFP STRSTETISR PGRRLNPGQP PESVAFSFTQ SGSSVRQQQQ
301: LPATSPFVDP LDARAIPVTG SSSSGDGQPS MIHLPALTRN IHQFAWSASS SSRANSMPEE GLSPWDAPRI NSEQPVFTTP ANETRNPVQD QFCWSFTRGN
401: PSTSGDSPFV PRAGSSSGIH GLQPNPTWVT PHNQSRISEV APWSLFPSIE SESATHGASL PLLPTGPSVS SNEAAAPSGS SSRSHRSRQR RSGLLLERQN
501: DHLHLRHLGR SLAADNDGRN RLISEIRQVL SAMRRGENLR FEDYMVFDPL IYQGMAEMHD RHRDMRLDVD NMSYEELLAL GERIGDVSTG LSEEVILKVM
601: KQHKHTSSAA GSHQDMEPCC VCQEEYAEGD DLGTLGCGHE FHTACVKQWL MLKNLCPICK TVALST

Arabidopsis Description

MBR2E3 ubiquitin-protein ligase MBR2 [Source:UniProtKB/Swiss-Prot;Acc:O49500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.