CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015289_P001	Maize	nucleus	84.75	77.56
HORVU3Hr1G054920.1	Barley	cytosol	11.2	63.04
Zm00001d015453_P001	Maize	cytosol	15.44	62.02
Zm00001d019616_P001	Maize	cytosol	15.25	61.24
Zm00001d013776_P001	Maize	cytosol	14.86	59.69
TraesCS6A01G121400.2	Wheat	nucleus	58.49	51.97
TraesCS6D01G111500.2	Wheat	nucleus	59.46	51.08
TraesCS6B01G149700.2	Wheat	nucleus	55.41	50.89
Os02t0150700-01	Rice	extracellular	58.11	46.96
HORVU6Hr1G022370.10	Barley	mitochondrion	57.53	42.88
KXG20741	Sorghum	nucleus	45.56	40.0
Bra024009.1-P	Field mustard	nucleus	11.78	34.86
GSMUA_Achr3P05160_001	Banana	nucleus	37.84	33.28
CDX97032	Canola	plastid	21.24	32.84
CDY71882	Canola	plastid	21.81	32.29
CDY13429	Canola	cytosol	16.02	32.17
CDX85750	Canola	nucleus	23.36	31.35
VIT_04s0008g02390.t01	Wine grape	nucleus	33.2	31.27
GSMUA_Achr6P03840_001	Banana	nucleus	21.04	29.38
PGSC0003DMT400067670	Potato	nucleus	29.92	29.36
Solyc08g006460.2.1	Tomato	nucleus	29.92	29.19
KRH04957	Soybean	nucleus	29.34	28.57
OQU80744	Sorghum	mitochondrion	7.92	28.47
KRH16134	Soybean	nucleus	30.31	28.29
KRH52597	Soybean	nucleus	29.15	27.91
Bra006070.1-P	Field mustard	nucleus	26.25	27.47
CDX95473	Canola	nucleus	24.52	27.37
CDX88140	Canola	nucleus	25.29	27.18
CDX78393	Canola	nucleus	25.87	27.13
CDY68658	Canola	nucleus	24.52	27.08
Solyc12g096420.1.1	Tomato	nucleus	28.76	27.04
EES12797	Sorghum	nucleus	19.5	27.01
CDX97044	Canola	nucleus	25.87	26.27
OQU80147	Sorghum	nucleus	17.95	25.98
AT5G24870.2	Thale cress	nucleus	26.06	25.96
CDY40109	Canola	nucleus	9.27	25.81
CDX70363	Canola	nucleus	23.94	25.51
GSMUA_Achr10P...	Banana	nucleus	24.9	25.49
CDX69813	Canola	mitochondrion	26.06	25.33
Bra009015.1-P	Field mustard	plastid	26.06	25.33
EER99218	Sorghum	nucleus	8.49	25.14
PGSC0003DMT400075959	Potato	nucleus	26.25	24.95
KRH61936	Soybean	nucleus	26.45	24.6
AT5G10650.2	Thale cress	nucleus	24.52	24.19
Bra009800.1-P	Field mustard	nucleus	17.95	22.68
GSMUA_Achr7P15850_001	Banana	nucleus	27.22	21.69
OQU87370	Sorghum	nucleus	14.09	20.92
CDY63645	Canola	nucleus	17.95	20.13
EES11283	Sorghum	nucleus	9.46	19.84
Bra024007.1-P	Field mustard	nucleus	17.76	19.7
CDY13433	Canola	nucleus	17.57	19.53
KXG40075	Sorghum	cytosol	9.27	19.28
EES18624	Sorghum	cytosol, mitochondrion, nucleus, plastid	13.9	19.15
AT4G31450.2	Thale cress	nucleus	18.15	18.91
KXG19166	Sorghum	nucleus	9.27	17.65
EES15239	Sorghum	nucleus	10.04	16.56
EER97094	Sorghum	nucleus	10.23	16.36
EES03404	Sorghum	nucleus	16.41	16.31
EES00281	Sorghum	nucleus	16.22	16.31
KXG22536	Sorghum	nucleus	15.44	15.75
EES19093	Sorghum	nucleus	16.02	15.43
EES10483	Sorghum	nucleus	19.5	14.51
EES11547	Sorghum	nucleus	17.95	14.09

Protein Annotations

EnsemblPlants:EES04530	EnsemblPlantsGene:SORBI_3004G042100	EntrezGene:8074641	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF60	PFAM:PF13639	PFscan:PS50089
ProteinID:EES04530	ProteinID:EES04530.1	ProteinID:KXG29477.1	RefSeq:XP_002451554.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	unigene:Sbi.12895	UniParc:UPI0001A854DC	UniProt:C5XUQ0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr4:+:3454030..3461280

Molecular Weight (calculated)

57963.5 Da

IEP (calculated)

9.129

GRAVY (calculated)

-0.845

Length

518 amino acids

Sequence
(BLAST)

001: MEEYSDRGSK AEIAYLRRGS RFSSRNQSSE ERTNNHSSDK PGSSTRFNPM KARIGDNQER PRYVRDSFKS SSSKVAPASS SKFPLSKFEE RRRQPFLPGF
101: DNAGSSRRKV DAKRLVGSKK IAVDNESSDT LQGESEGFTT EQVPYPEGSH FTGHSGVSSY TVKSLVQTAS LSSRTQRQKH KEVNMGTPGA CSSSLTNGSS
201: IPGNSTMGVR PAYGHVSGGQ VRGLKNLGCT SVPDAQPSGC PSESVSSRRF EFMRKRAFDQ ENSSRSRSLS LGLSPPTDIH NTGHRIRMNE QSLSQQIPQR
301: SSRNHQEPAV SVRTRRPSPH ATRMSVPDER ADGMLSLHES PTRNVQPAQE HLSLEEVSTE SSIRPFFVEF DNNIFSSSRR RCSNTRAERQ LLVLETNLFF
401: GAFASYDRHR DMRMDIDNMS YEELLALEER IGSVSTALSE EQFTKCLRRS IYSQVASEVS KSTVDDMKCS ICQEEYMEGE EVGRLPCEHW YHVCCIGQWL
501: RQKNWCPVCK ASAVPSKG

Best Arabidopsis Sequence Match ( AT4G31450.1 )
(BLAST)

001: MDRWSSKRAM EARPDSKKKG GVVFRDRFNS NSCKVPICSD EKKSMNFTRF VGSSDKKEKS VLSTYRSSPN GKEVIGTSSK ICISSSSSVK SGEKQPFSQI
101: AIDSSESSRG SEDEVESEIL QVPLGRDKRR MNNKLIYGKV ITPEAECSKL PSSSRIKRGF RQRFGLSKQE FHPGPSGQST SANRGCSPLL SGVIPSGFGL
201: DKRLSRKADT ISKTKVYGES SSSSSARGKN VTEPPPVEVR RRSFNPRGSV SDSRRARHCI LDDDNDVASV GSQRLANRNN SRIRGSGRDG LSSVTAAEMS
301: QTETSNNLNS PVSLELFSGF PEFGLSGSLL SHDSFRSYNL DGISEILPEL DRIEQDIELN YEDLLIMETG LLLGGLSFHD QHRDMRLDID NMSYEELLAL
401: EERIGTVSTA LTEEAISKCL KTSIYQMKPL SYGSITKSPS DNKEDAKCSI CQEEYTIGDE VGRLHCEHTY HVKCVQEWLR IKSWCPICKA TAETSSK

Arabidopsis Description

At4g31450/F3L17_20 [Source:UniProtKB/TrEMBL;Acc:Q944Q9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.