Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d015453_P001 | Maize | cytosol | 21.2 | 93.02 |
| Zm00001d019616_P001 | Maize | cytosol | 21.02 | 92.25 |
| Zm00001d013776_P001 | Maize | cytosol | 20.85 | 91.47 |
| EES04530 | Sorghum | nucleus | 77.56 | 84.75 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 11.31 | 69.57 |
| Zm00001d015323_P002 | Maize | cytosol | 12.54 | 62.83 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 55.65 | 54.03 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 53.18 | 53.37 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 56.54 | 53.07 |
| Os02t0150700-01 | Rice | extracellular | 54.95 | 48.52 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 55.48 | 45.18 |
| Zm00001d014609_P002 | Maize | nucleus | 43.99 | 42.56 |
| CDX97032 | Canola | plastid | 22.61 | 38.21 |
| CDY71882 | Canola | plastid | 22.97 | 37.14 |
| GSMUA_Achr3P05160_001 | Banana | nucleus | 37.1 | 35.65 |
| Zm00001d026446_P001 | Maize | cytosol | 11.48 | 35.33 |
| Bra024009.1-P | Field mustard | nucleus | 10.78 | 34.86 |
| CDX85750 | Canola | nucleus | 23.5 | 34.46 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 32.69 | 33.64 |
| GSMUA_Achr6P03840_001 | Banana | nucleus | 21.91 | 33.42 |
| KRH04957 | Soybean | nucleus | 30.39 | 32.33 |
| KRH52597 | Soybean | nucleus | 30.21 | 31.61 |
| CDY13429 | Canola | cytosol | 14.31 | 31.4 |
| Bra006070.1-P | Field mustard | nucleus | 27.39 | 31.31 |
| KRH16134 | Soybean | nucleus | 30.57 | 31.17 |
| CDX78393 | Canola | nucleus | 27.03 | 30.97 |
| PGSC0003DMT400067670 | Potato | nucleus | 28.8 | 30.87 |
| CDX95473 | Canola | nucleus | 25.27 | 30.82 |
| CDX88140 | Canola | nucleus | 26.15 | 30.71 |
| Solyc08g006460.2.1 | Tomato | nucleus | 28.45 | 30.32 |
| CDY40109 | Canola | nucleus | 9.89 | 30.11 |
| CDY68658 | Canola | nucleus | 24.91 | 30.06 |
| AT5G24870.2 | Thale cress | nucleus | 27.39 | 29.81 |
| CDX97044 | Canola | nucleus | 26.68 | 29.61 |
| CDX70363 | Canola | nucleus | 25.27 | 29.42 |
| Solyc12g096420.1.1 | Tomato | nucleus | 27.92 | 28.68 |
| KRH61936 | Soybean | nucleus | 27.92 | 28.37 |
| AT5G10650.2 | Thale cress | nucleus | 26.15 | 28.19 |
| CDX69813 | Canola | mitochondrion | 26.15 | 27.77 |
| GSMUA_Achr10P... | Banana | nucleus | 24.73 | 27.67 |
| Bra009015.1-P | Field mustard | plastid | 25.97 | 27.58 |
| PGSC0003DMT400075959 | Potato | nucleus | 26.33 | 27.34 |
| Zm00001d024406_P002 | Maize | nucleus | 16.78 | 26.54 |
| Zm00001d026248_P001 | Maize | nucleus | 17.67 | 26.32 |
| Zm00001d021225_P002 | Maize | cytosol | 7.77 | 25.14 |
| Bra009800.1-P | Field mustard | nucleus | 17.49 | 24.15 |
| GSMUA_Achr7P15850_001 | Banana | nucleus | 27.56 | 24.0 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 16.25 | 23.17 |
| Zm00001d011636_P001 | Maize | nucleus | 13.25 | 22.19 |
| Zm00001d043784_P002 | Maize | nucleus | 12.9 | 21.1 |
| Zm00001d053212_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 10.07 | 19.86 |
| Zm00001d038909_P001 | Maize | cytosol, mitochondrion | 13.25 | 19.53 |
| CDY63645 | Canola | nucleus | 15.72 | 19.26 |
| Bra024007.1-P | Field mustard | nucleus | 15.72 | 19.06 |
| CDY13433 | Canola | nucleus | 15.55 | 18.88 |
| Zm00001d048301_P001 | Maize | cytosol | 7.95 | 18.67 |
| Zm00001d045517_P001 | Maize | mitochondrion, nucleus | 8.83 | 18.66 |
| AT4G31450.2 | Thale cress | nucleus | 16.25 | 18.51 |
| Zm00001d027868_P004 | Maize | cytosol | 8.3 | 17.41 |
| Zm00001d008649_P003 | Maize | cytosol | 15.02 | 16.13 |
| Zm00001d006226_P001 | Maize | peroxisome | 9.01 | 16.04 |
| Zm00001d011541_P004 | Maize | nucleus | 15.02 | 16.04 |
| Zm00001d039769_P002 | Maize | cytosol | 15.55 | 15.97 |
| Zm00001d026445_P001 | Maize | nucleus | 17.84 | 15.42 |
| Zm00001d025027_P002 | Maize | nucleus | 18.9 | 15.37 |
| Zm00001d002080_P002 | Maize | nucleus | 17.84 | 15.23 |
| Zm00001d009571_P002 | Maize | nucleus | 13.6 | 15.04 |
| Zm00001d004300_P003 | Maize | nucleus | 18.37 | 14.99 |
| Zm00001d021314_P005 | Maize | cytosol, mitochondrion, nucleus | 8.48 | 14.91 |
| Zm00001d002624_P003 | Maize | cytosol | 8.13 | 13.69 |
| Zm00001d039015_P002 | Maize | cytosol | 9.01 | 12.47 |
| Zm00001d037536_P006 | Maize | mitochondrion, plastid | 8.48 | 7.8 |
Protein Annotations
| EMBL:BT041832 | EnsemblPlants:Zm00001d015289_P001 | EnsemblPlants:Zm00001d015289_T001 | EnsemblPlantsGene:Zm00001d015289 | EntrezGene:100273800 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR22937 |
| PANTHER:PTHR22937:SF60 | PFAM:PF13639 | PFscan:PS50089 | ProteinID:AQK68582.1 | ProteinID:AQK68584.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00017B7D03 | UniProt:B4FXJ4 | MapMan:35.1 | : |
Description
RING/U-box superfamily protein
Coordinates
chr5:+:82829898..82835200
Molecular Weight (calculated)
63027.7 Da
IEP (calculated)
8.653
GRAVY (calculated)
-0.758
Length
566 amino acids
Sequence
(BLAST)
(BLAST)
001: MERYSDMRPK AEVSYLGRGS RFSSRNQSSE ERTNHSSDKP GSSTRFNPTK ARIGGNQGRP RYVCDSFKSP SSKVSPAGSS KFPLSKFEER RRQPFVPGFD
101: IAESSRRKAD AKQLQGSKKI AAENDSSDNL RGESEGFTTE QVVKPEGSHV VGHSGVSAYT VGSLVQTASL GSRTHRQKHK EVNLGTPGAS SSTLTNRSTI
201: PGNSTMGVRP AYGHVNGGQI HGLKNLGCSS VPDAQPSGCP SESVISRRRF EFMRKRAFDQ ESSSRSVNLS LGHSTPTDIR RIRMNEQSLC QQIPRSSSRS
301: HQESAGSVRT RRPSPHATRM SVPDGRADGV LSLHESSTKD VQPAQEHLSL EEVSTESSIR PFFVEFDNNI FSSSHLRRSS TRAERGRPSS LFEESPRQMF
401: HSLMGERDRH RHITMEGITE VLAALERIEQ QAELTYDQLL MLEANLFFGA FASYDRHRDM RMDIDDMSYE ELLALEERIG SVSTALSEEQ FTKCLKRSIY
501: SQVALEVNKS TVDDMKCIIC QEEYAEGEEV GRLPCEHRYH VCCIGQWLGQ KNWCPVCKAS AVPSKG
101: IAESSRRKAD AKQLQGSKKI AAENDSSDNL RGESEGFTTE QVVKPEGSHV VGHSGVSAYT VGSLVQTASL GSRTHRQKHK EVNLGTPGAS SSTLTNRSTI
201: PGNSTMGVRP AYGHVNGGQI HGLKNLGCSS VPDAQPSGCP SESVISRRRF EFMRKRAFDQ ESSSRSVNLS LGHSTPTDIR RIRMNEQSLC QQIPRSSSRS
301: HQESAGSVRT RRPSPHATRM SVPDGRADGV LSLHESSTKD VQPAQEHLSL EEVSTESSIR PFFVEFDNNI FSSSHLRRSS TRAERGRPSS LFEESPRQMF
401: HSLMGERDRH RHITMEGITE VLAALERIEQ QAELTYDQLL MLEANLFFGA FASYDRHRDM RMDIDDMSYE ELLALEERIG SVSTALSEEQ FTKCLKRSIY
501: SQVALEVNKS TVDDMKCIIC QEEYAEGEEV GRLPCEHRYH VCCIGQWLGQ KNWCPVCKAS AVPSKG
001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS
Arabidopsis Description
At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.