Factsheet for Bra009015.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69813	Canola	mitochondrion	96.44	96.44
CDX97044	Canola	nucleus	88.93	92.94
CDX97032	Canola	plastid	57.79	91.94
CDY71882	Canola	plastid	60.23	91.71
CDX95473	Canola	nucleus	78.99	90.73
Bra006070.1-P	Field mustard	nucleus	71.67	77.17
AT5G10650.2	Thale cress	nucleus	72.61	73.71
Bra028576.1-P	Field mustard	cytosol	37.52	70.67
HORVU3Hr1G054920.1	Barley	cytosol	9.01	52.17
Bra009800.1-P	Field mustard	nucleus	38.09	49.51
Zm00001d019616_P001	Maize	cytosol	11.63	48.06
Zm00001d015453_P001	Maize	cytosol	11.63	48.06
Zm00001d013776_P001	Maize	cytosol	11.63	48.06
VIT_04s0008g02390.t01	Wine grape	nucleus	44.65	43.27
GSMUA_AchrUn_...	Banana	nucleus	18.01	42.67
KRH04957	Soybean	nucleus	42.03	42.11
KRH52597	Soybean	nucleus	41.84	41.22
KRH16134	Soybean	nucleus	40.9	39.28
Bra024009.1-P	Field mustard	nucleus	12.57	38.29
PGSC0003DMT400067670	Potato	nucleus	37.52	37.88
Solyc12g096420.1.1	Tomato	nucleus	38.84	37.57
Solyc08g006460.2.1	Tomato	nucleus	36.59	36.72
PGSC0003DMT400075959	Potato	nucleus	37.52	36.7
KRH61936	Soybean	nucleus	37.71	36.09
GSMUA_Achr1P23500_001	Banana	nucleus	29.08	30.16
TraesCS6B01G149700.2	Wheat	nucleus	30.39	28.72
TraesCS6A01G121400.2	Wheat	nucleus	31.14	28.47
Os06t0695600-01	Rice	nucleus	30.58	28.15
KXG20741	Sorghum	nucleus	30.77	27.8
TraesCS7B01G328500.1	Wheat	nucleus	29.83	27.51
Zm00001d014609_P002	Maize	nucleus	30.02	27.35
HORVU7Hr1G098540.1	Barley	nucleus	30.02	27.3
TraesCS7D01G420400.1	Wheat	nucleus	29.27	27.23
TraesCS6D01G111500.2	Wheat	nucleus	30.77	27.2
HORVU2Hr1G101370.5	Barley	nucleus	18.95	26.93
TraesCS2B01G456100.1	Wheat	nucleus	18.76	26.81
Os08t0241400-00	Rice	nucleus	18.95	26.79
EES12797	Sorghum	nucleus	18.76	26.74
TraesCS2A01G437200.1	Wheat	nucleus	18.2	26.29
Bra019499.1-P	Field mustard	nucleus	8.07	26.22
TraesCS2D01G432800.1	Wheat	nucleus	18.2	26.08
EES04530	Sorghum	nucleus	25.33	26.06
OQU80147	Sorghum	nucleus	17.45	25.98
Zm00001d024406_P002	Maize	nucleus	17.45	25.98
Zm00001d015289_P001	Maize	nucleus	27.58	25.97
Zm00001d026248_P001	Maize	nucleus	17.64	24.74
Os02t0150700-01	Rice	extracellular	29.27	24.34
Zm00001d002416_P002	Maize	endoplasmic reticulum, extracellular, vacuole	18.01	24.18
TraesCS7A01G428300.2	Wheat	nucleus	25.7	23.58
Bra015967.1-P	Field mustard	nucleus	15.76	23.53
HORVU6Hr1G022370.10	Barley	mitochondrion	30.58	23.45
Os04t0603200-01	Rice	nucleus	14.45	23.4
Bra024007.1-P	Field mustard	nucleus	20.45	23.34
Bra003830.1-P	Field mustard	nucleus, plastid	14.63	23.01
Bra016574.1-P	Field mustard	nucleus	14.45	21.51
Bra040450.1-P	Field mustard	nucleus	9.19	20.25
Bra027467.1-P	Field mustard	nucleus	13.51	17.56
Bra039659.1-P	Field mustard	nucleus	14.45	16.74
Bra027282.1-P	Field mustard	nucleus	13.7	16.4
Bra023101.1-P	Field mustard	nucleus	16.32	16.32
Bra001582.1-P	Field mustard	nucleus	13.32	16.25
Bra038109.1-P	Field mustard	nucleus	14.26	15.83
Bra039842.1-P	Field mustard	nucleus	17.64	15.75
Bra015221.1-P	Field mustard	nucleus	17.64	15.75
Bra022466.1-P	Field mustard	nucleus	9.57	15.74
Bra022580.1-P	Field mustard	cytosol	5.25	15.56
Bra038240.1-P	Field mustard	nucleus	9.57	15.32
Bra033652.1-P	Field mustard	nucleus	17.07	14.8
Bra017205.1-P	Field mustard	nucleus	14.63	14.53
Bra022579.1-P	Field mustard	cytosol	3.56	14.39
Bra014043.1-P	Field mustard	nucleus	15.01	13.89
Bra028293.1-P	Field mustard	nucleus	5.44	12.13
Bra036336.1-P	Field mustard	nucleus	7.88	8.35

Protein Annotations

EnsemblPlants:Bra009015.1	EnsemblPlants:Bra009015.1-P	EnsemblPlantsGene:Bra009015	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF53	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025444E7	UniProt:M4CXR8	MapMan:35.1

Description

AT5G10650 (E=3e-176) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA10:+:14873549..14877077

Molecular Weight (calculated)

57638.0 Da

IEP (calculated)

10.127

GRAVY (calculated)

-0.635

Length

533 amino acids

Sequence
(BLAST)

001: MAFSVLEALH VFYGRRRIIA RRRKKRERMD GCAGKRSVDR MVLPRKASGP VLRENMKKKD EKSVSFCSRI ACSAKVTSTK GTNRIGSTAD NAKVGRPGKE
101: IVGSSSRAPG GFGYLRKPAV GTTGRRQPSS NVDTGSSETS SSLDHPAAVK PILPRLKTKR GAISVQSQNT VSGEVVGSSS RGTIRSSHQK PGLRTRDALM
201: PPSVSSSSGS DHTLRGGLSR NGLRNLRCNS VSDVLPTKSS SGTKVSVTKK KNSDGESSSS SQGIKSRVSV MKGRNQSSTH GNGITVSDNR RNRMVPTIRD
301: NSVVSSSGRR SGRLGAVASP ATSRQTPQPA APIDPNPSLS VTPSNSHSST DWLSSMMPGS PSEAHPSSSL VNRDGLSGYN MNGIAEALLV LDRIDQELRY
401: EQLASLETNL FASGMIRFYD QHSDMRLDID NMSYEELLAL GDEIGTVSTA LSEEALSRSL KKSIYQETDE TGPISLDKDD DIKCSICQEE YVDGDEVGTM
501: PCEHMYHVSC VQQWLRMKNW CPICKTSAEE EKS

Best Arabidopsis Sequence Match ( AT5G10650.1 )
(BLAST)

001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI

Arabidopsis Description

At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.