Factsheet for Bra027282.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97629	Canola	nucleus	90.11	90.93
Bra001582.1-P	Field mustard	nucleus	62.47	63.62
AT3G15070.1	Thale cress	nucleus	67.64	61.93
Bra039659.1-P	Field mustard	nucleus	45.17	43.7
Bra038109.1-P	Field mustard	nucleus	45.84	42.5
VIT_19s0014g01850.t01	Wine grape	nucleus	36.4	30.11
KRH30071	Soybean	cytosol	22.92	29.65
VIT_03s0097g00680.t01	Wine grape	nucleus	25.84	27.32
KRH55161	Soybean	nucleus	28.09	27.29
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	23.82	26.97
KRH26195	Soybean	nucleus	27.42	26.64
VIT_03s0088g01090.t01	Wine grape	nucleus	26.52	25.82
KRH55165	Soybean	nucleus	17.98	25.72
Solyc12g014070.1.1	Tomato	nucleus	29.66	24.67
KRH22017	Soybean	nucleus	28.99	24.43
Bra019499.1-P	Field mustard	nucleus	8.99	24.39
KRH55090	Soybean	nucleus	20.22	24.19
Bra024009.1-P	Field mustard	nucleus	9.44	24.0
Solyc10g007140.2.1	Tomato	nucleus	27.87	23.89
PGSC0003DMT400039631	Potato	nucleus	28.76	23.88
PGSC0003DMT400054921	Potato	nucleus	27.19	23.31
Bra040450.1-P	Field mustard	nucleus	11.24	20.66
Bra003830.1-P	Field mustard	nucleus, plastid	14.38	18.88
HORVU3Hr1G061010.4	Barley	nucleus	21.12	17.87
Bra015967.1-P	Field mustard	nucleus	14.16	17.65
TraesCS3D01G244600.1	Wheat	nucleus	20.67	17.42
TraesCS3B01G272400.4	Wheat	nucleus	20.45	17.23
Os01t0667700-02	Rice	nucleus	20.22	17.18
Bra016574.1-P	Field mustard	nucleus	13.71	17.04
TraesCS3A01G246900.3	Wheat	nucleus	20.0	16.89
Bra027467.1-P	Field mustard	nucleus	15.51	16.83
EES03404	Sorghum	nucleus	19.33	16.51
KXG22536	Sorghum	nucleus	18.43	16.14
Os05t0564300-01	Rice	nucleus	17.98	16.0
Zm00001d009571_P002	Maize	nucleus	17.98	15.62
Zm00001d011541_P004	Maize	nucleus	18.43	15.47
Bra024007.1-P	Field mustard	nucleus	16.18	15.42
HORVU1Hr1G087900.1	Barley	cytosol	17.98	15.38
Bra006070.1-P	Field mustard	nucleus	17.08	15.35
Bra023101.1-P	Field mustard	nucleus	17.98	15.01
Bra022580.1-P	Field mustard	cytosol	6.07	15.0
TraesCS1D01G405800.9	Wheat	cytosol	17.53	14.89
TraesCS1A01G398300.8	Wheat	cytosol	17.08	14.1
Bra017205.1-P	Field mustard	nucleus	16.85	13.97
Solyc07g062720.1.1	Tomato	nucleus	24.27	13.94
TraesCS1B01G426200.9	Wheat	cytosol	17.08	13.87
Bra009015.1-P	Field mustard	plastid	16.4	13.7
PGSC0003DMT400032385	Potato	nucleus	24.72	13.55
Bra022466.1-P	Field mustard	nucleus	9.66	13.27
Bra038240.1-P	Field mustard	nucleus	9.89	13.21
Bra033652.1-P	Field mustard	nucleus	17.98	13.01
Bra015221.1-P	Field mustard	nucleus	16.63	12.4
Bra039842.1-P	Field mustard	nucleus	16.63	12.4
Bra028293.1-P	Field mustard	nucleus	6.29	11.72
Zm00001d039015_P002	Maize	cytosol	10.56	11.49
Bra014043.1-P	Field mustard	nucleus	14.38	11.11
Bra022579.1-P	Field mustard	cytosol	3.15	10.61
Bra009800.1-P	Field mustard	nucleus	8.76	9.51
Bra028576.1-P	Field mustard	cytosol	5.17	8.13
Bra036336.1-P	Field mustard	nucleus	6.07	5.37

Protein Annotations

EnsemblPlants:Bra027282.1	EnsemblPlants:Bra027282.1-P	EnsemblPlantsGene:Bra027282	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002547B24	UniProt:M4EES0	MapMan:35.1

Description

AT3G15070 (E=2e-132) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA05:+:20098561..20100318

Molecular Weight (calculated)

49873.9 Da

IEP (calculated)

6.475

GRAVY (calculated)

-0.663

Length

445 amino acids

Sequence
(BLAST)

001: MLTGLDMEQH SRTFGLPPPD ISVPSFEPYD NNNSMLYGLQ QSHHHQRPSS FGPAMSTPPY FHLRYAPFHA PPFAPGGTST EHERDAHVMS QGYKRKSTQV
101: MPGNFQYQST TEAPFPFPHY GPQPVDERSV RNSAGAASMD PPLSHVHNNF IQGSYLAHPF PPPGSVWYDQ HYNGNTSDGS SSSLWPQPPS LPYMHGSAAS
201: NSIDSGNVCF PRYHENSSSR NQTPFVYPRH NHFSHHPAPP PTLFPHLASV SYTVPMTIHD ASYSHVGPVQ STGFCINPQR PLDDFVPAAT LRNHGLPRFR
301: AFPTDEVAVF REGGFYDAVD YVDHHQDMRL DIEDMSYEEL LALSDHIGTV KTGISEEDAK GFLKRRTSLW TRINLEEAPS TDLETDSCTI CQENYKNQDK
401: IATLDCRHEY HAECLKKWLV IKNICPVCKS EALGHGKEEG TIKSL

Best Arabidopsis Sequence Match ( AT3G15070.2 )
(BLAST)

001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR

Arabidopsis Description

At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.