Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054921 | Potato | nucleus | 97.11 | 97.11 |
| Solyc12g014070.1.1 | Tomato | nucleus | 61.46 | 59.63 |
| VIT_19s0014g01850.t01 | Wine grape | nucleus | 43.74 | 42.19 |
| VIT_03s0088g00930.t01 | Wine grape | nucleus, plastid | 27.94 | 36.9 |
| VIT_03s0088g01090.t01 | Wine grape | nucleus | 32.18 | 36.54 |
| VIT_03s0097g00680.t01 | Wine grape | nucleus | 28.9 | 35.63 |
| KRH22017 | Soybean | nucleus | 33.91 | 33.33 |
| KRH55161 | Soybean | nucleus | 28.9 | 32.75 |
| KRH26195 | Soybean | nucleus | 28.52 | 32.31 |
| KRH30071 | Soybean | cytosol | 20.62 | 31.1 |
| AT1G53190.1 | Thale cress | nucleus | 29.29 | 30.77 |
| Bra039659.1-P | Field mustard | nucleus | 26.78 | 30.22 |
| CDY24110 | Canola | nucleus | 26.78 | 30.22 |
| Solyc07g062720.1.1 | Tomato | nucleus | 45.09 | 30.19 |
| CDY26006 | Canola | nucleus | 26.59 | 29.87 |
| CDY25871 | Canola | nucleus | 26.59 | 28.87 |
| Bra038109.1-P | Field mustard | nucleus | 26.59 | 28.75 |
| CDY55839 | Canola | nucleus | 26.78 | 28.43 |
| KRH55165 | Soybean | nucleus | 16.96 | 28.3 |
| Bra027282.1-P | Field mustard | nucleus | 23.89 | 27.87 |
| KRH55090 | Soybean | nucleus | 19.85 | 27.69 |
| CDY68521 | Canola | nucleus | 23.31 | 27.44 |
| CDX97629 | Canola | nucleus | 23.31 | 27.44 |
| Bra001582.1-P | Field mustard | nucleus | 22.74 | 27.0 |
| CDX75805 | Canola | cytosol | 22.54 | 26.41 |
| CDX82450 | Canola | nucleus | 22.74 | 26.34 |
| AT3G15070.1 | Thale cress | nucleus | 24.08 | 25.72 |
| Solyc12g010500.1.1 | Tomato | nucleus | 8.29 | 24.02 |
| Solyc11g062260.1.1 | Tomato | nucleus | 11.18 | 23.58 |
| Solyc09g007530.2.1 | Tomato | nucleus | 23.12 | 22.14 |
| Os05t0564300-01 | Rice | nucleus | 19.65 | 20.4 |
| EES03404 | Sorghum | nucleus | 20.23 | 20.15 |
| Os01t0667700-02 | Rice | nucleus | 20.23 | 20.04 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 11.75 | 20.0 |
| KXG22536 | Sorghum | nucleus | 19.27 | 19.68 |
| Zm00001d011541_P004 | Maize | nucleus | 20.04 | 19.62 |
| TraesCS3A01G246900.3 | Wheat | nucleus | 19.46 | 19.17 |
| Zm00001d009571_P002 | Maize | nucleus | 18.88 | 19.14 |
| Solyc12g019190.1.1 | Tomato | mitochondrion | 8.09 | 19.09 |
| Solyc03g026150.2.1 | Tomato | nucleus | 8.67 | 18.99 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 19.27 | 18.94 |
| TraesCS3B01G272400.4 | Wheat | nucleus | 19.27 | 18.94 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 18.5 | 18.46 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 18.69 | 18.44 |
| Solyc12g019200.1.1 | Tomato | mitochondrion | 7.71 | 18.18 |
| Solyc03g118840.2.1 | Tomato | nucleus | 12.91 | 17.31 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 17.34 | 17.18 |
| TraesCS1A01G398300.8 | Wheat | cytosol | 17.53 | 16.88 |
| TraesCS1B01G426200.9 | Wheat | cytosol | 17.73 | 16.79 |
| Zm00001d039015_P002 | Maize | cytosol | 12.72 | 16.14 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 6.74 | 15.91 |
| Solyc12g088740.1.1 | Tomato | nucleus | 20.62 | 15.44 |
| Solyc08g006460.2.1 | Tomato | nucleus | 15.22 | 14.88 |
| Solyc01g107940.2.1 | Tomato | nucleus | 20.23 | 14.85 |
| Solyc01g087060.2.1 | Tomato | nucleus | 10.4 | 14.59 |
| Solyc04g078680.2.1 | Tomato | nucleus | 20.23 | 14.54 |
| Solyc09g007620.1.1 | Tomato | nucleus | 4.82 | 14.29 |
| Solyc12g096420.1.1 | Tomato | nucleus | 15.03 | 14.16 |
| Solyc01g107930.2.1 | Tomato | nucleus | 19.08 | 13.79 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 19.08 | 13.64 |
| Solyc02g005480.2.1 | Tomato | nucleus | 4.24 | 8.21 |
Protein Annotations
| EnsemblPlants:Solyc10g007140.2.1 | EnsemblPlantsGene:Solyc10g007140.2 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF48 | PFAM:PF13639 | PFscan:PS50089 | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI000276B1B7 | UniProt:K4CXP4 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr10:+:1543949..1548850
Molecular Weight (calculated)
57470.9 Da
IEP (calculated)
6.195
GRAVY (calculated)
-0.569
Length
519 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYSNQITDS EAEQRSQDVQ PEPYAFYRSL ATFPQPNVHA ILPAPGNAGN FYLHHPQYHQ EGALVYGKLQ YDGVQYQHPA TNLDPAIASS SNHYNHYMAA
101: PSTPRDFPIP VNHGQHEQLP FASTQGNLGV NEGNYGRNNP YVDGVGGSFK RKNAEGIPVN FQYQHALVGS SFPLASMNAA SFVPPEYRGN GSLSFTEDGA
201: PRGMNNHQLQ GNYVGQACEF PGNFWSGLQF NSSARESETW AWNHSARLPY LPGDTQGCED GGNISVRGYQ VTNGNGGLTS FIYPSIPQGH PNLRHLPPHI
301: QGVRPQFITL PPQMTASSHR HLPSSSFDST INPFALVEAG SRYIRPFPPT AFRLYRPQRG EFMLGTNTRL HNLPNMRVLP EDGVAMLDIP GYHEVRDSVD
401: QHREMRMDVD HMSYEELLAL GEQIGTAKTG LSEEVIVGHL KTRSFSSTEI PCNLENAACL DHKTDFCVIC QSDYKDQENV GTLDCGHEYH AECVTNWLIL
501: KNNCPICKST ALCAEAKDS
101: PSTPRDFPIP VNHGQHEQLP FASTQGNLGV NEGNYGRNNP YVDGVGGSFK RKNAEGIPVN FQYQHALVGS SFPLASMNAA SFVPPEYRGN GSLSFTEDGA
201: PRGMNNHQLQ GNYVGQACEF PGNFWSGLQF NSSARESETW AWNHSARLPY LPGDTQGCED GGNISVRGYQ VTNGNGGLTS FIYPSIPQGH PNLRHLPPHI
301: QGVRPQFITL PPQMTASSHR HLPSSSFDST INPFALVEAG SRYIRPFPPT AFRLYRPQRG EFMLGTNTRL HNLPNMRVLP EDGVAMLDIP GYHEVRDSVD
401: QHREMRMDVD HMSYEELLAL GEQIGTAKTG LSEEVIVGHL KTRSFSSTEI PCNLENAACL DHKTDFCVIC QSDYKDQENV GTLDCGHEYH AECVTNWLIL
501: KNNCPICKST ALCAEAKDS
001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV
Arabidopsis Description
At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.