Factsheet for Solyc10g050170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
nucleus 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g107940.2.1	Tomato	nucleus	52.62	54.03
Solyc01g107930.2.1	Tomato	nucleus	53.03	53.62
Zm00001d026446_P001	Maize	cytosol	12.4	48.91
VIT_03s0063g00160.t01	Wine grape	nucleus	40.77	40.33
KRH50319	Soybean	nucleus	34.57	35.1
KRH70661	Soybean	mitochondrion, nucleus	33.33	33.2
Bra015221.1-P	Field mustard	nucleus	27.14	33.0
CDY37230	Canola	nucleus	26.31	32.43
CDY62314	Canola	nucleus	26.31	32.26
Bra039842.1-P	Field mustard	nucleus	26.31	31.99
Solyc04g078680.2.1	Tomato	nucleus	31.68	31.86
Solyc12g088740.1.1	Tomato	nucleus	29.48	30.88
GSMUA_Achr8P15680_001	Banana	nucleus	30.44	30.69
AT4G34040.1	Thale cress	nucleus	27.82	30.33
GSMUA_Achr9P11290_001	Banana	nucleus	28.51	29.7
Os04t0648800-01	Rice	nucleus	26.86	29.24
Zm00001d002080_P002	Maize	nucleus	26.31	28.81
HORVU2Hr1G113970.2	Barley	cytosol, nucleus	22.73	28.55
HORVU2Hr1G113930.2	Barley	nucleus	24.93	27.68
TraesCS2D01G516000.1	Wheat	nucleus	25.48	27.65
Zm00001d026445_P001	Maize	nucleus	24.93	27.63
EES11547	Sorghum	nucleus	25.07	27.58
TraesCS2A01G514400.3	Wheat	nucleus	25.34	27.5
TraesCS2B01G542200.2	Wheat	nucleus	25.21	27.31
AT2G15530.4	Thale cress	nucleus	29.06	27.05
Solyc12g010500.1.1	Tomato	nucleus	6.2	25.14
EES10483	Sorghum	nucleus	22.73	23.71
Zm00001d004300_P003	Maize	nucleus	22.31	23.34
Solyc12g040390.1.1	Tomato	nucleus, plastid	9.78	23.28
Zm00001d025027_P002	Maize	nucleus	22.18	23.13
Solyc03g118840.2.1	Tomato	nucleus	11.71	21.96
Solyc12g019190.1.1	Tomato	mitochondrion	6.61	21.82
HORVU2Hr1G003340.5	Barley	nucleus	21.21	21.81
Os04t0185500-01	Rice	nucleus	21.21	21.72
Solyc08g006460.2.1	Tomato	nucleus	15.7	21.47
TraesCS2D01G022900.1	Wheat	nucleus	20.66	21.4
TraesCS2A01G022100.1	Wheat	nucleus	20.52	21.26
TraesCS2B01G030700.1	Wheat	nucleus	20.39	21.11
Solyc12g019200.1.1	Tomato	mitochondrion	6.2	20.45
Solyc03g026150.2.1	Tomato	nucleus	6.61	20.25
Solyc12g096420.1.1	Tomato	nucleus	15.29	20.15
Solyc11g062260.1.1	Tomato	nucleus	6.61	19.51
Solyc12g014070.1.1	Tomato	nucleus	14.33	19.44
Solyc09g007530.2.1	Tomato	nucleus	14.33	19.19
Solyc10g007140.2.1	Tomato	nucleus	13.64	19.08
Solyc09g007620.1.1	Tomato	nucleus	3.99	16.57
Solyc05g008840.1.1	Tomato	nucleus, plastid	4.82	15.91
Solyc01g087060.2.1	Tomato	nucleus	7.58	14.86
Solyc07g062720.1.1	Tomato	nucleus	14.74	13.81
Solyc02g005480.2.1	Tomato	nucleus	4.41	11.94

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4D0H3
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF127	SMART:SM00184	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc10g050170.1	EnsemblPlants:Solyc10g050170.1.1	UniParc:UPI000276A3A3	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

No Description!

Coordinates

chr10:-:48072406..48076803

Molecular Weight (calculated)

78581.4 Da

IEP (calculated)

6.920

GRAVY (calculated)

-0.525

Length

726 amino acids

Sequence
(BLAST)

001: MFLLTLHRLK PSTYRLMVKL YCGFYSDCDR YILCWGSFTG ALKVPVFLKM THMQGDRSVL DSFPENIDLN QGSVSNNASM DATAPWDNFR NPVDNRLSNP
101: MLSPSGRNPS YVNGVNYNAQ SFSGWDQGES SSTANLHDRT RGSDLKIGQG WTSSSNDYVM INPRSERRFE PSNVFSTSGY GGNHVIGRPP SVSSSLTLDH
201: SPVNSNLSGG YNNDDGRLVM RTSVPPLHKS DRSEVVRPPA FSPSGSGTFT GGSSSSNAGP ENTVQHNYPS CNNASSSINR LPRSANMQNV GYLENTYPRN
301: GVGTSMSASD IFPPLSAGGI AESSARNFGA IANLVNQDLI TSGLLPIGAT VGHSSVSPAH VPPGSASVTS SLDSRQPFSQ PMNSGNLGGQ SHMMQVPGFS
401: RGFHSLPWEA SPSSRGGSSS MISGDRGASL GDESNFSTVR NNGESHPFVP ETRNMVLDPT NWSLATANAS SSRNIPSSAM GPGSRARNSP TAWANQNSAT
501: TSYDGLPEFA PWVLFPSGEP ESGSQRGRSS LLPSAASSSE DPVMSSRYGS RGNRQPHLRS SLMVDPGDDV DGWRALAADV EGRHRLIRQV LNAMRRVENL
601: RSEDYMLVDP FINGVAEFHD RHRAMRLDVD NMSYEELLAL EERIGNVNTG LSEETISVNM KQRKHGSLRG QSSSNLEPCC ICQEEYTSGD IMGILDCGHE
701: FHTNCIKQWL ILKNTCPICK MTALKT

Best Arabidopsis Sequence Match ( AT2G15530.5 )
(BLAST)

001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHGGTSVRPT GSLQQNLPLN SPFVDPPDVR SSSITSGSNT GENQTNIVHL PALTRNIHQY AWDASFSSRA SNPSGIGMPA ERLGPQWETP
401: RSNQEQPLFA PATDMRQPVH DLWNFARGSP GSSVDSLFVP RAGPSSAIHT PQPNPTWIPP QNAPPHNPSR TSELSPWSLF PSIESPSASH GGPLPLLPAG
501: PSVSSNEVTM PSSSNSRSHR SRHRRSGLLL ERQNELLHLR HIGRSLAADG NGRNQIISEI RQVLHAMRRG ENLRVEDYMV FDPLIYQGMT DMHDRHREMR
601: LDVDNMSYEE LLALGERIGD VSTGLSEEVI LKAMKQHKHT SSSPSSVELH QNIEPCCICQ EEYVEGDNLG TLKCGHEFHK DCIKQWVMIK NLCPICKTEA
701: LKTP

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.