Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G514400.3 | Wheat | nucleus | 96.56 | 96.56 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 91.78 | 93.88 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 80.72 | 93.43 |
| TraesCS2B01G542200.2 | Wheat | nucleus | 92.53 | 92.39 |
| Os04t0648800-01 | Rice | nucleus | 73.24 | 73.46 |
| EES11547 | Sorghum | nucleus | 69.21 | 70.15 |
| Zm00001d002080_P002 | Maize | nucleus | 68.46 | 69.08 |
| Zm00001d026445_P001 | Maize | nucleus | 67.56 | 69.01 |
| Zm00001d026446_P001 | Maize | cytosol | 18.09 | 65.76 |
| PGSC0003DMT400079217 | Potato | cytosol | 9.72 | 65.66 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 9.27 | 31.0 |
| VIT_03s0063g00160.t01 | Wine grape | nucleus | 32.29 | 29.43 |
| Bra015221.1-P | Field mustard | nucleus | 25.56 | 28.64 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 4.78 | 27.12 |
| CDY62314 | Canola | nucleus | 23.17 | 26.18 |
| KRH50319 | Soybean | nucleus | 27.95 | 26.15 |
| CDY37230 | Canola | nucleus | 22.87 | 25.98 |
| Bra039842.1-P | Field mustard | nucleus | 23.02 | 25.8 |
| AT4G34040.1 | Thale cress | nucleus | 25.56 | 25.68 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 27.65 | 25.48 |
| KRH70661 | Soybean | mitochondrion, nucleus | 27.35 | 25.1 |
| PGSC0003DMT400066252 | Potato | nucleus | 26.76 | 25.04 |
| Solyc01g107930.2.1 | Tomato | nucleus | 26.46 | 24.65 |
| Solyc01g107940.2.1 | Tomato | nucleus | 26.01 | 24.61 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 13.6 | 24.46 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 25.56 | 24.39 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 5.98 | 23.39 |
| AT2G15530.4 | Thale cress | nucleus | 26.91 | 23.08 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 10.91 | 21.1 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 8.07 | 20.0 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 15.55 | 19.7 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 15.55 | 19.4 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 14.8 | 19.11 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 7.32 | 19.07 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 16.89 | 18.74 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 8.82 | 17.35 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 13.15 | 16.79 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 6.13 | 16.33 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 7.32 | 16.33 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 13.45 | 15.71 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G516000.1 | EnsemblPlantsGene:TraesCS2D01G516000 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR14155 | PANTHER:PTHR14155:SF464 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16481 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2D:-:607418500..607423378
Molecular Weight (calculated)
72592.2 Da
IEP (calculated)
6.619
GRAVY (calculated)
-0.586
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGQRNSVEQ LSDVFGFDHG SGSGNPVMDQ QAYWNSMLGA AESQNLQGYE MNRGDGAIPY GGEAHQDGQF LGFWGSGEAS SSGNALNYGS SNAIKAEHLN
101: IGGGLRIGER RLGAEHSLSL DNVDINLNAS GHDLFGQSSN ANNASQGSQQ HAGCSRTDAT AQATELRLHP YRTFGLDDEQ PEPFPSLNAF EHPLGNFALM
201: PEDVDQRPGS SSLDGRRLAC KRKNIEGVHG QFSAGASTSF SHRNDNAFHS VPSSSFNPAP GPNVPSHNFL LAPSSIEEQL PNYGAATGMS SVSYNHPSGG
301: NNISGNSQRS FRARTTTAQQ VSPYGVWPPS GSIRHPGSYY HQAPAFQSAF DELEAAMPVV SGINLQYQHP GNVVPGIPQT AHRFAGHGAS SSRAGSLDNI
401: ILGREEVSGR NLVAPGFPNA APHAALDMRH LVPDLSNWNS DNPGATIPGN VSSVSRANAS STISRPAGST SLTHQNLHRR HPRNLSEEIG RLSGALRGPQ
501: HPRIRSGFLL ERQGDGVWGV PLPMRNTREG RRLMEIRNAL EMIQRGENVR FEQSIFYGGV EIHDRHRDMR LDIDNMSYEE LLALEERIGN VSTGLTENDV
601: MKLLKQRKFS SWRLSSVEHE PCCICQEEYV DGDDLGTLHC GHDFHASCIR QWLVVKNLCP ICKSTALKT
101: IGGGLRIGER RLGAEHSLSL DNVDINLNAS GHDLFGQSSN ANNASQGSQQ HAGCSRTDAT AQATELRLHP YRTFGLDDEQ PEPFPSLNAF EHPLGNFALM
201: PEDVDQRPGS SSLDGRRLAC KRKNIEGVHG QFSAGASTSF SHRNDNAFHS VPSSSFNPAP GPNVPSHNFL LAPSSIEEQL PNYGAATGMS SVSYNHPSGG
301: NNISGNSQRS FRARTTTAQQ VSPYGVWPPS GSIRHPGSYY HQAPAFQSAF DELEAAMPVV SGINLQYQHP GNVVPGIPQT AHRFAGHGAS SSRAGSLDNI
401: ILGREEVSGR NLVAPGFPNA APHAALDMRH LVPDLSNWNS DNPGATIPGN VSSVSRANAS STISRPAGST SLTHQNLHRR HPRNLSEEIG RLSGALRGPQ
501: HPRIRSGFLL ERQGDGVWGV PLPMRNTREG RRLMEIRNAL EMIQRGENVR FEQSIFYGGV EIHDRHRDMR LDIDNMSYEE LLALEERIGN VSTGLTENDV
601: MKLLKQRKFS SWRLSSVEHE PCCICQEEYV DGDDLGTLHC GHDFHASCIR QWLVVKNLCP ICKSTALKT
001: MNPMQGPRSI GGSSTEVNQV DGESIYCTET SLNTMLNPAD TGFPNNSTPS GRPTYASSSS HAAQDHTWWR FGESSSIPGP SDQVNSIGIK TSHQLPQDGT
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHDPPDVRSS SITSGSNTGE NQTNIVHLPA LTRNIHQYAW DASFSSRASN PSGIGMPAER LGPQWETPRS NQEQPLFAPA TDMRQPVHDL
401: WNFARGSPGS SVDSLFVPRA GPSSAIHTPQ PNPTWIPPQN APPHNPSRTS ELSPWSLFPS IESPSASHGG PLPLLPAGPS VSSNEVTMPS SSNSRSHRSR
501: HRRSGLLLER QNELLHLRHI GRSLAADGNG RNQIISEIRQ VLHAMRRGEN LRVEDYMVFD PLIYQGMTDM HDRHREMRLD VDNMSYEELL ALGERIGDVS
601: TGLSEEVILK AMKQHKHTSS SPSSVELHQN IEPCCICQEE YVEGDNLGTL KCGHEFHKDC IKQWVMIKNL CPICKTEALK TP
101: HHFVGYGSEG RQTGLNGMMV DGGVHAGSHI RNVPSFLRGS SSNPMPQHVD MSMDMDSDNC NAQTSGVVIR HNSYGSSLGS SVQAAGESSS GPASPFGGWG
201: SSCKRKALEG SPSHYFSGET PNRIVQTENS ASHASLSQYG ASSSLSLATP SQSSPNVTNH FGRTEQMFGS GGGRAVAASA FHSTRNTDTL SRAGRRLNPR
301: QPQESVAFSV SHDPPDVRSS SITSGSNTGE NQTNIVHLPA LTRNIHQYAW DASFSSRASN PSGIGMPAER LGPQWETPRS NQEQPLFAPA TDMRQPVHDL
401: WNFARGSPGS SVDSLFVPRA GPSSAIHTPQ PNPTWIPPQN APPHNPSRTS ELSPWSLFPS IESPSASHGG PLPLLPAGPS VSSNEVTMPS SSNSRSHRSR
501: HRRSGLLLER QNELLHLRHI GRSLAADGNG RNQIISEIRQ VLHAMRRGEN LRVEDYMVFD PLIYQGMTDM HDRHREMRLD VDNMSYEELL ALGERIGDVS
601: TGLSEEVILK AMKQHKHTSS SPSSVELHQN IEPCCICQEE YVEGDNLGTL KCGHEFHKDC IKQWVMIKNL CPICKTEALK TP
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IIG9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.