Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G437200.1 | Wheat | nucleus | 95.7 | 96.48 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 96.51 | 96.25 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 94.35 | 93.6 |
| EES12797 | Sorghum | nucleus | 61.29 | 60.96 |
| Os04t0603200-01 | Rice | nucleus | 53.76 | 60.79 |
| Zm00001d026248_P001 | Maize | nucleus | 58.33 | 57.11 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 60.22 | 56.42 |
| TraesCS3D01G260700.1 | Wheat | nucleus | 16.67 | 31.0 |
| Bra024009.1-P | Field mustard | nucleus | 14.25 | 30.29 |
| TraesCS5D01G286700.1 | Wheat | nucleus | 8.6 | 27.12 |
| CDY13429 | Canola | cytosol | 18.55 | 26.74 |
| CDX97032 | Canola | plastid | 22.85 | 25.37 |
| CDY71882 | Canola | plastid | 23.12 | 24.57 |
| CDX85750 | Canola | nucleus | 25.27 | 24.35 |
| CDY40109 | Canola | nucleus | 11.29 | 22.58 |
| TraesCS5D01G319600.1 | Wheat | cytosol, nucleus, plastid | 9.95 | 21.64 |
| TraesCS1D01G380000.2 | Wheat | nucleus | 18.55 | 19.94 |
| CDX78393 | Canola | nucleus | 26.34 | 19.84 |
| CDX70363 | Canola | nucleus | 25.81 | 19.75 |
| CDX95473 | Canola | nucleus | 24.46 | 19.61 |
| Bra006070.1-P | Field mustard | nucleus | 26.08 | 19.6 |
| KRH04957 | Soybean | nucleus | 27.96 | 19.55 |
| KRH16134 | Soybean | nucleus | 28.76 | 19.28 |
| CDX97044 | Canola | nucleus | 26.08 | 19.02 |
| TraesCS7D01G049800.1 | Wheat | nucleus | 12.63 | 18.73 |
| Bra009015.1-P | Field mustard | plastid | 26.08 | 18.2 |
| KRH52597 | Soybean | nucleus | 26.34 | 18.11 |
| CDX69813 | Canola | mitochondrion | 25.81 | 18.01 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 26.61 | 18.0 |
| CDY68658 | Canola | nucleus | 22.58 | 17.91 |
| AT5G10650.2 | Thale cress | nucleus | 25.27 | 17.9 |
| Solyc08g006460.2.1 | Tomato | nucleus | 25.54 | 17.89 |
| AT5G24870.2 | Thale cress | nucleus | 24.73 | 17.69 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 26.88 | 17.45 |
| CDX88140 | Canola | nucleus | 22.58 | 17.43 |
| PGSC0003DMT400067670 | Potato | nucleus | 24.73 | 17.42 |
| TraesCS2D01G397800.1 | Wheat | cytosol | 11.83 | 17.12 |
| PGSC0003DMT400075959 | Potato | nucleus | 25.0 | 17.06 |
| Solyc12g096420.1.1 | Tomato | nucleus | 24.19 | 16.33 |
| Bra024007.1-P | Field mustard | nucleus | 20.16 | 16.06 |
| CDY63645 | Canola | nucleus | 19.89 | 16.02 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 25.81 | 15.92 |
| CDY13433 | Canola | nucleus | 19.89 | 15.88 |
| TraesCS4D01G192500.2 | Wheat | cytosol, nucleus, vacuole | 11.29 | 15.56 |
| AT4G31450.2 | Thale cress | nucleus | 20.7 | 15.49 |
| TraesCS7D01G271800.4 | Wheat | cytosol, mitochondrion, nucleus | 12.1 | 15.0 |
| TraesCS1D01G111500.1 | Wheat | nucleus | 20.7 | 14.37 |
| KRH61936 | Soybean | nucleus | 21.51 | 14.36 |
| TraesCS5D01G331600.1 | Wheat | cytosol, mitochondrion, nucleus | 12.9 | 14.12 |
| TraesCS3D01G105300.1 | Wheat | cytosol | 19.09 | 13.71 |
| TraesCS2D01G516000.1 | Wheat | nucleus | 24.46 | 13.6 |
| TraesCS3D01G244600.1 | Wheat | nucleus | 19.09 | 13.45 |
| Bra009800.1-P | Field mustard | nucleus | 14.78 | 13.41 |
| TraesCS2D01G022900.1 | Wheat | nucleus | 24.73 | 13.12 |
| TraesCS1D01G405800.9 | Wheat | cytosol | 17.74 | 12.6 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G432800.1 | EnsemblPlantsGene:TraesCS2D01G432800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF46 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16454 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2D:+:544781160..544782592
Molecular Weight (calculated)
40100.7 Da
IEP (calculated)
9.036
GRAVY (calculated)
-0.813
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHMGRRTV GGLLFTKGGS ILLFREDSSR RKAGACCSRN GCNGTRHSAD KGRPMHSHRE AASAAAKEAA PTPRRSQPIR KSPQGSSNPA EPCSETDNGT
101: GEAAAPGAGR DLLARLKDRV NASRKRSLAR EMSSPSSSSG GFSASSSGGG ATRSSAVSKP TRRAVSRIRK ADEGENAGGG RRAPRRDTGG GDARGNSGDP
201: VMVGQRAARE QAPTEGFISG FLARYRGSLQ GGSSLQDGTE DSSGYWRFDV EGSEEMENYF MLSDRHRAMR MDIDGMSYEE LLALGDRIGT VNTGLSEDAL
301: YKCLKRSLYT PTAPETHQDC DRKCSICQEE YSGGEEVGNM ACKHYYHITC IQHWLRQKNW CPICKSVAAK TV
101: GEAAAPGAGR DLLARLKDRV NASRKRSLAR EMSSPSSSSG GFSASSSGGG ATRSSAVSKP TRRAVSRIRK ADEGENAGGG RRAPRRDTGG GDARGNSGDP
201: VMVGQRAARE QAPTEGFISG FLARYRGSLQ GGSSLQDGTE DSSGYWRFDV EGSEEMENYF MLSDRHRAMR MDIDGMSYEE LLALGDRIGT VNTGLSEDAL
301: YKCLKRSLYT PTAPETHQDC DRKCSICQEE YSGGEEVGNM ACKHYYHITC IQHWLRQKNW CPICKSVAAK TV
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.