Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G456100.1 | Wheat | nucleus | 94.13 | 94.64 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 93.6 | 94.35 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 92.0 | 93.5 |
| Os04t0603200-01 | Rice | nucleus | 55.2 | 62.92 |
| EES12797 | Sorghum | nucleus | 62.13 | 62.3 |
| Zm00001d026248_P001 | Maize | nucleus | 59.73 | 58.95 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 60.27 | 56.93 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 10.67 | 43.48 |
| Bra024009.1-P | Field mustard | nucleus | 14.13 | 30.29 |
| CDY13429 | Canola | cytosol | 18.67 | 27.13 |
| CDX97032 | Canola | plastid | 23.73 | 26.57 |
| CDY71882 | Canola | plastid | 24.0 | 25.71 |
| CDX85750 | Canola | nucleus | 25.87 | 25.13 |
| CDY40109 | Canola | nucleus | 11.2 | 22.58 |
| HORVU5Hr1G080540.5 | Barley | nucleus | 9.6 | 20.93 |
| CDX95473 | Canola | nucleus | 25.33 | 20.47 |
| CDX78393 | Canola | nucleus | 26.93 | 20.45 |
| CDX70363 | Canola | nucleus | 26.4 | 20.37 |
| HORVU3Hr1G064370.1 | Barley | plastid | 20.8 | 20.26 |
| Bra006070.1-P | Field mustard | nucleus | 26.67 | 20.2 |
| HORVU7Hr1G009940.2 | Barley | nucleus | 12.8 | 20.17 |
| CDX97044 | Canola | nucleus | 26.93 | 19.8 |
| KRH04957 | Soybean | nucleus | 27.47 | 19.36 |
| KRH16134 | Soybean | nucleus | 28.53 | 19.28 |
| HORVU1Hr1G082970.1 | Barley | plastid | 19.2 | 19.1 |
| Bra009015.1-P | Field mustard | plastid | 26.93 | 18.95 |
| CDX69813 | Canola | mitochondrion | 26.67 | 18.76 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 27.47 | 18.73 |
| CDY68658 | Canola | nucleus | 23.2 | 18.55 |
| AT5G10650.2 | Thale cress | nucleus | 25.87 | 18.48 |
| KRH52597 | Soybean | nucleus | 26.4 | 18.3 |
| AT5G24870.2 | Thale cress | nucleus | 25.33 | 18.27 |
| Solyc08g006460.2.1 | Tomato | nucleus | 25.87 | 18.27 |
| CDX88140 | Canola | nucleus | 23.2 | 18.05 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 28.0 | 17.92 |
| PGSC0003DMT400067670 | Potato | nucleus | 25.07 | 17.8 |
| PGSC0003DMT400075959 | Potato | nucleus | 25.33 | 17.43 |
| Solyc12g096420.1.1 | Tomato | nucleus | 24.8 | 16.88 |
| Bra024007.1-P | Field mustard | nucleus | 20.27 | 16.27 |
| CDY63645 | Canola | nucleus | 20.0 | 16.23 |
| CDY13433 | Canola | nucleus | 20.0 | 16.09 |
| HORVU2Hr1G094980.4 | Barley | cytosol | 11.2 | 15.85 |
| AT4G31450.2 | Thale cress | nucleus | 20.53 | 15.49 |
| HORVU2Hr1G113970.2 | Barley | cytosol, nucleus | 23.73 | 15.4 |
| HORVU7Hr1G057310.5 | Barley | cytosol, nucleus, plastid | 12.27 | 15.38 |
| KRH61936 | Soybean | nucleus | 21.87 | 14.72 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 26.4 | 14.24 |
| HORVU2Hr1G113930.2 | Barley | nucleus | 24.53 | 14.07 |
| HORVU1Hr1G024190.2 | Barley | nucleus | 20.0 | 13.97 |
| Bra009800.1-P | Field mustard | nucleus | 15.2 | 13.9 |
| HORVU5Hr1G082790.2 | Barley | nucleus | 12.8 | 13.87 |
| HORVU3Hr1G061010.4 | Barley | nucleus | 19.2 | 13.69 |
| HORVU1Hr1G087900.1 | Barley | cytosol | 18.4 | 13.27 |
| HORVU2Hr1G003340.5 | Barley | nucleus | 24.53 | 13.03 |
| HORVU3Hr1G018800.2 | Barley | cytosol, plastid | 20.0 | 12.73 |
| HORVU4Hr1G055690.5 | Barley | peroxisome, plastid | 10.93 | 11.65 |
| HORVU3Hr1G054870.1 | Barley | cytosol, mitochondrion | 9.07 | 7.93 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G101370.5 | EnsemblPlantsGene:HORVU2Hr1G101370 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF46 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B46CE7F | UniProt:A0A287J717 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr2H:-:693684131..693687409
Molecular Weight (calculated)
40653.4 Da
IEP (calculated)
9.447
GRAVY (calculated)
-0.832
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEHMGRRTV GGLLFTKGGS ILLFREDSSR RKAGACCPRN GCNGTRHSTD KGRPTPSHRE AAATAAKEAA PTTRRSQPLR KKPPQGSSNP AEPCSETDNR
101: TGETAAPGAG RDLLARLKDR VNASRKRSLA REMSSSSSSS GGFSASSSGG GATRSSAVSR PTRRAASRIR KADEGENAGG ARRAPRRDTG GGVGARRNSD
201: DPVMVGQRAA REQAPTEGFI SGFLARYRGS LQGGSSLQDG TEDSSGYWRF DVEGSEELEN YFMLSDRHRA MRMDIDGMSY EELLALGDRI GTVNTGLSED
301: ALYKCLKRSL YTPTAPETHL DCDRKCSICQ QEEYSGGEEV GNMACKHYYH ITCIQHWLRQ KNWCPICKSV AAKTV
101: TGETAAPGAG RDLLARLKDR VNASRKRSLA REMSSSSSSS GGFSASSSGG GATRSSAVSR PTRRAASRIR KADEGENAGG ARRAPRRDTG GGVGARRNSD
201: DPVMVGQRAA REQAPTEGFI SGFLARYRGS LQGGSSLQDG TEDSSGYWRF DVEGSEELEN YFMLSDRHRA MRMDIDGMSY EELLALGDRI GTVNTGLSED
301: ALYKCLKRSL YTPTAPETHL DCDRKCSICQ QEEYSGGEEV GNMACKHYYH ITCIQHWLRQ KNWCPICKSV AAKTV
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.