Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g006460.2.1 | Tomato | nucleus | 59.71 | 61.96 |
| HORVU3Hr1G054920.1 | Barley | cytosol | 9.8 | 58.7 |
| Zm00001d019616_P001 | Maize | cytosol | 13.07 | 55.81 |
| Zm00001d015453_P001 | Maize | cytosol | 13.07 | 55.81 |
| Zm00001d013776_P001 | Maize | cytosol | 12.89 | 55.04 |
| VIT_04s0008g02390.t01 | Wine grape | nucleus | 47.73 | 47.82 |
| CDX97032 | Canola | plastid | 28.68 | 47.16 |
| CDX85750 | Canola | nucleus | 32.3 | 46.11 |
| CDY71882 | Canola | plastid | 28.86 | 45.43 |
| KRH04957 | Soybean | nucleus | 43.19 | 44.74 |
| KRH52597 | Soybean | nucleus | 43.74 | 44.55 |
| KRH16134 | Soybean | nucleus | 43.01 | 42.7 |
| GSMUA_AchrUn_... | Banana | nucleus | 17.42 | 42.67 |
| CDX78393 | Canola | nucleus | 38.11 | 42.51 |
| Bra006070.1-P | Field mustard | nucleus | 37.39 | 41.62 |
| CDX95473 | Canola | nucleus | 34.48 | 40.95 |
| CDX97044 | Canola | nucleus | 37.39 | 40.39 |
| CDX70363 | Canola | nucleus | 35.57 | 40.33 |
| CDY68658 | Canola | nucleus | 33.76 | 39.66 |
| KRH61936 | Soybean | nucleus | 39.75 | 39.32 |
| Bra009015.1-P | Field mustard | plastid | 37.57 | 38.84 |
| CDX69813 | Canola | mitochondrion | 37.39 | 38.65 |
| CDX88140 | Canola | nucleus | 33.76 | 38.59 |
| AT5G10650.2 | Thale cress | nucleus | 36.12 | 37.9 |
| AT5G24870.2 | Thale cress | nucleus | 35.75 | 37.88 |
| CDY40109 | Canola | nucleus | 12.34 | 36.56 |
| Bra024009.1-P | Field mustard | nucleus | 11.07 | 34.86 |
| CDY13429 | Canola | cytosol | 15.06 | 32.17 |
| Bra009800.1-P | Field mustard | nucleus | 23.41 | 31.46 |
| TraesCS7B01G328500.1 | Wheat | nucleus | 32.49 | 30.97 |
| TraesCS7D01G420400.1 | Wheat | nucleus | 31.58 | 30.37 |
| HORVU7Hr1G098540.1 | Barley | nucleus | 31.94 | 30.03 |
| GSMUA_Achr1P23500_001 | Banana | nucleus | 27.77 | 29.77 |
| Os06t0695600-01 | Rice | nucleus | 31.03 | 29.53 |
| TraesCS6A01G121400.2 | Wheat | nucleus | 30.49 | 28.82 |
| EES04530 | Sorghum | nucleus | 27.04 | 28.76 |
| TraesCS6B01G149700.2 | Wheat | nucleus | 29.04 | 28.37 |
| KXG20741 | Sorghum | nucleus | 30.13 | 28.14 |
| Zm00001d014609_P002 | Maize | nucleus | 29.76 | 28.03 |
| Zm00001d015289_P001 | Maize | nucleus | 28.68 | 27.92 |
| TraesCS7A01G428300.2 | Wheat | nucleus | 29.22 | 27.71 |
| TraesCS6D01G111500.2 | Wheat | nucleus | 29.76 | 27.2 |
| Os02t0150700-01 | Rice | extracellular | 30.49 | 26.21 |
| OQU80147 | Sorghum | nucleus | 16.88 | 25.98 |
| Os08t0241400-00 | Rice | nucleus | 17.6 | 25.73 |
| Solyc12g010500.1.1 | Tomato | nucleus | 8.35 | 25.7 |
| Zm00001d024406_P002 | Maize | nucleus | 16.52 | 25.42 |
| EES12797 | Sorghum | nucleus | 17.06 | 25.13 |
| HORVU2Hr1G101370.5 | Barley | nucleus | 16.88 | 24.8 |
| TraesCS2B01G456100.1 | Wheat | nucleus | 16.7 | 24.66 |
| TraesCS2A01G437200.1 | Wheat | nucleus | 16.52 | 24.66 |
| Solyc12g040390.1.1 | Tomato | nucleus, plastid | 13.61 | 24.59 |
| TraesCS2D01G432800.1 | Wheat | nucleus | 16.33 | 24.19 |
| Os04t0603200-01 | Rice | nucleus | 14.34 | 24.01 |
| HORVU6Hr1G022370.10 | Barley | mitochondrion | 30.13 | 23.88 |
| Zm00001d002416_P002 | Maize | endoplasmic reticulum, extracellular, vacuole | 16.7 | 23.17 |
| Zm00001d026248_P001 | Maize | nucleus | 15.97 | 23.16 |
| CDY13433 | Canola | nucleus | 18.33 | 21.67 |
| Solyc03g118840.2.1 | Tomato | nucleus | 15.06 | 21.45 |
| Bra024007.1-P | Field mustard | nucleus | 18.15 | 21.41 |
| CDY63645 | Canola | nucleus | 17.6 | 21.0 |
| Solyc12g019190.1.1 | Tomato | mitochondrion | 8.17 | 20.45 |
| AT4G31450.2 | Thale cress | nucleus | 17.97 | 19.92 |
| Solyc12g019200.1.1 | Tomato | mitochondrion | 7.8 | 19.55 |
| Solyc11g062260.1.1 | Tomato | nucleus | 8.71 | 19.51 |
| Solyc05g008840.1.1 | Tomato | nucleus, plastid | 7.26 | 18.18 |
| Solyc03g026150.2.1 | Tomato | nucleus | 7.62 | 17.72 |
| Solyc01g107930.2.1 | Tomato | nucleus | 21.42 | 16.43 |
| Solyc09g007530.2.1 | Tomato | nucleus | 15.97 | 16.24 |
| Solyc12g088740.1.1 | Tomato | nucleus | 20.33 | 16.16 |
| Solyc01g107940.2.1 | Tomato | nucleus | 20.69 | 16.12 |
| Solyc04g078680.2.1 | Tomato | nucleus | 21.05 | 16.07 |
| Solyc12g014070.1.1 | Tomato | nucleus | 15.43 | 15.89 |
| Solyc10g050170.1.1 | Tomato | mitochondrion, nucleus | 20.15 | 15.29 |
| Solyc10g007140.2.1 | Tomato | nucleus | 14.16 | 15.03 |
| Solyc09g007620.1.1 | Tomato | nucleus | 4.72 | 14.86 |
| Solyc01g087060.2.1 | Tomato | nucleus | 9.62 | 14.32 |
| Solyc07g062720.1.1 | Tomato | nucleus | 13.79 | 9.81 |
| Solyc02g005480.2.1 | Tomato | nucleus | 3.63 | 7.46 |
Protein Annotations
| EnsemblPlants:Solyc12g096420.1.1 | EnsemblPlantsGene:Solyc12g096420.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22937 | PANTHER:PTHR22937:SF53 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002769D37 | UniProt:K4DHB5 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr12:+:65345203..65347970
Molecular Weight (calculated)
60564.8 Da
IEP (calculated)
5.646
GRAVY (calculated)
-0.845
Length
551 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEYPVKRAG NGLVAARRGL RDTAENKDKN VQYCSRLGCS GRVNYTKSTR VGGMEKPRPL RPTFGSSNGK EVVGSSSVTS SGMTTARRSG KESHKKYSSN
101: IEDKRSDTSS LRKESQVLKQ MQSSTERQFQ FDSAKRDTGS SKVVFTEVGC SSGTSNSRPR KIFGHGPGSS NQKSPMNSSI SSSSKSISAG TRSSSSGEGY
201: RLRNLKCNST PDVLPYSSSS SESSISRRET VKRRNTEGES SSSSKGKKMS GASPNEGRAV RPATGISISD SRSSRSSDFS DGNRAVSVRT RRSMNVSTRL
301: RGPVQDSLHT KSSGLSQNLP EHGTPNLDMP SSSSQLFMDS SSSDYSTYSL PANDYDDDDE DEDEDDDLPG VVPFTSAEIC INGMNREALQ RYNMDGVAQV
401: LLALERIEQD EELSYERLLA LESNLFLSGL NFYDQHRDMR LDIDDMSYEE LLALEERIGS VSTALPEEEL SKCLRRNIYQ GMASETETLE ADEDGDDIKC
501: SICQEEYVIG DEIGNLGCEH GYHMECIKQW FKLKNWCPIC KAAVESSKPT S
101: IEDKRSDTSS LRKESQVLKQ MQSSTERQFQ FDSAKRDTGS SKVVFTEVGC SSGTSNSRPR KIFGHGPGSS NQKSPMNSSI SSSSKSISAG TRSSSSGEGY
201: RLRNLKCNST PDVLPYSSSS SESSISRRET VKRRNTEGES SSSSKGKKMS GASPNEGRAV RPATGISISD SRSSRSSDFS DGNRAVSVRT RRSMNVSTRL
301: RGPVQDSLHT KSSGLSQNLP EHGTPNLDMP SSSSQLFMDS SSSDYSTYSL PANDYDDDDE DEDEDDDLPG VVPFTSAEIC INGMNREALQ RYNMDGVAQV
401: LLALERIEQD EELSYERLLA LESNLFLSGL NFYDQHRDMR LDIDDMSYEE LLALEERIGS VSTALPEEEL SKCLRRNIYQ GMASETETLE ADEDGDDIKC
501: SICQEEYVIG DEIGNLGCEH GYHMECIKQW FKLKNWCPIC KAAVESSKPT S
001: MDGCAGKRSV DRLVVPRKAS GLTLRENMNK TDGKNVPFCS RVGCTAKVTS TKRSRIGSTD NNTKVGLPPV PSTLNRKEIV GSSSRTPGGF GYLRKPAKVT
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
101: ARRQPSSSLD TESSETSCIH DDPAATEPTL PRQKTKRVTI NVHPQSAVSR EVVITKAGSS SRGTSRISHP KSELGTRDAL TGPSVSTSSG NSEHTVRGGL
201: SRHRLRNLSC NSVSDVLPTN SNSATKISVT KKKNADGESS LSSKGSKTSV LVPKVRNQIS SHGNGVTVSD NRRNRVVPSI RDSSTVVSNG CRRAGYFGRS
301: ERLGATASSA TSRQMPHPTT PTDPNPSLSF CPSNIYSSTG RVHSNMPGSP TEADPSSSLV NRDGLSHYNM NGIAEVLLAL ERIEHDEELT YEQLASIETN
401: LFSSGMFRFY DQHRDMRLDI DNMSYEELLA LGDKMGTVST ALSEEALSRS LKQSIYQETD ETGSISLYKD DDIKCSICQE EYVDGDELGT IPCQHMYHVS
501: CVQQWLRMKN WCPICKTSAE EEKSI
Arabidopsis Description
At5g10650 [Source:UniProtKB/TrEMBL;Acc:Q5XEP8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.