Factsheet for TraesCS7D01G420400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G328500.1	Wheat	nucleus	94.94	94.12
HORVU7Hr1G098540.1	Barley	nucleus	89.88	87.88
TraesCS7A01G428300.2	Wheat	nucleus	87.61	86.4
Os06t0695600-01	Rice	nucleus	66.67	65.98
KXG20741	Sorghum	nucleus	59.69	57.97
Zm00001d014609_P002	Maize	nucleus	57.77	56.58
TraesCS6D01G111500.2	Wheat	nucleus	50.26	47.76
CDX97032	Canola	plastid	23.56	40.3
CDY71882	Canola	plastid	23.91	39.14
GSMUA_Achr3P05160_001	Banana	nucleus	39.44	38.37
CDX85750	Canola	nucleus	25.83	38.34
CDY40109	Canola	nucleus	12.04	37.1
VIT_04s0008g02390.t01	Wine grape	nucleus	34.38	35.82
GSMUA_Achr6P03840_001	Banana	nucleus	22.86	35.31
KRH04957	Soybean	nucleus	32.29	34.77
CDX88140	Canola	nucleus	28.62	34.02
CDY68658	Canola	nucleus	27.4	33.48
Bra024009.1-P	Field mustard	nucleus	10.12	33.14
KRH52597	Soybean	nucleus	31.24	33.09
KRH16134	Soybean	nucleus	31.76	32.79
Solyc08g006460.2.1	Tomato	nucleus	30.37	32.77
PGSC0003DMT400067670	Potato	nucleus	30.19	32.77
CDX95473	Canola	nucleus	26.53	32.76
CDX78393	Canola	nucleus	28.1	32.59
Bra006070.1-P	Field mustard	nucleus	28.1	32.53
AT5G24870.2	Thale cress	nucleus	29.14	32.12
CDX70363	Canola	nucleus	27.23	32.1
Solyc12g096420.1.1	Tomato	nucleus	30.37	31.58
CDX97044	Canola	nucleus	28.1	31.57
CDY13429	Canola	cytosol	13.96	31.01
PGSC0003DMT400075959	Potato	nucleus	28.45	29.91
GSMUA_Achr10P...	Banana	nucleus	26.35	29.84
AT5G10650.2	Thale cress	nucleus	27.23	29.71
CDX69813	Canola	mitochondrion	27.4	29.46
Bra009015.1-P	Field mustard	plastid	27.23	29.27
KRH61936	Soybean	nucleus	27.75	28.55
TraesCS3D01G260700.1	Wheat	nucleus	9.95	28.5
TraesCS2D01G432800.1	Wheat	nucleus	17.45	26.88
Bra009800.1-P	Field mustard	nucleus	19.02	26.59
TraesCS5D01G286700.1	Wheat	nucleus	5.41	26.27
GSMUA_Achr7P15850_001	Banana	nucleus	27.57	24.31
TraesCS1D01G380000.2	Wheat	nucleus	13.09	21.68
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	6.28	21.05
Bra024007.1-P	Field mustard	nucleus	16.06	19.7
CDY63645	Canola	nucleus	15.88	19.7
CDY13433	Canola	nucleus	15.71	19.31
AT4G31450.2	Thale cress	nucleus	16.58	19.11
TraesCS7D01G049800.1	Wheat	nucleus	8.2	18.73
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	9.42	15.88
TraesCS1D01G111500.1	Wheat	nucleus	14.83	15.86
TraesCS3D01G105300.1	Wheat	cytosol	14.31	15.83
TraesCS2D01G022900.1	Wheat	nucleus	19.2	15.69
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	8.2	15.67
TraesCS2D01G397800.1	Wheat	cytosol	6.98	15.56
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	7.33	15.56
TraesCS1D01G405800.9	Wheat	cytosol	14.14	15.46
TraesCS3D01G244600.1	Wheat	nucleus	13.26	14.39
TraesCS2D01G516000.1	Wheat	nucleus	15.71	13.45

Protein Annotations

EnsemblPlants:TraesCS7D01G420400.1	EnsemblPlantsGene:TraesCS7D01G420400	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF99	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16454	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr7D:+:540235412..540237680

Molecular Weight (calculated)

63428.6 Da

IEP (calculated)

7.879

GRAVY (calculated)

-0.902

Length

573 amino acids

Sequence
(BLAST)

001: MEENAGRSTT TIGLLRRGSG VSLRNQSNEE RPNQFQNKPG NTTKATWAGN KEKPGYLRDS FNSSGSKSVS ASSSKAPVRK NYDEKLRRPL SAQFNNAESS
101: NRRTVVNRLQ SSKKAIANEE DGHPCAQQIE SEDSSSTSTT GDQPTGLDPE VLGSSVSSGS SSHAVDSLAR NTALRTKPRR QKDKEQIGLG KTQPAPTSVH
201: QPAGPRNLAI GMKSSNGAGP GVQRRGIKNL GCTSISDVLP SGCSSSNSVH SKRTEITRER ISDGETSSRP RGISGQPSLY PGSTGPRVRD SEQSASQQTA
301: RTSNRIIRDS ADSVRTRRPS TQQARMRMPD ETEQGVFALR ETFSGARQPD WARFSMNEVP PQRSTRPFPM ELPHAIYSSS RQGSSNRASR SRGSSRPEDS
401: SPQMFRDVYR RMNMDGIAEV LLALERIEQH DELSYEQLLV LETNLFLSGL GLNDQHRDMR MDIDDMSYEE LLQLEDRIGS VSTALSEEQL TNCLSRIMYK
501: WENAALEVNE PVVDDVKCSI CQEEYIEDEE VGRMKCEHQY HVCCIQEWLR QKNWCPICKA SAVPSSDADK GDT

Best Arabidopsis Sequence Match ( AT5G24870.3 )
(BLAST)

001: MDGFKGKRTS RPIMPRKASG LVLHENMKKK DDKSVVPICS RIGCSSRVSS TKGDLIDHKA KATVSSFRSP LSGKETVGSS SRSMSGFGGT KKASKVIGRR
101: QLSSLLDMDS SESSSVNEDS PTSERSLPRG KTKESTISVH SESSVSGEVV TEAGSSSRGT GRSIHQRPDL VSRDARVSNS EQNARASVNK NGLRDLRNKS
201: GSDVLPSNST PTRKSNIFRK KTSDGESSSS SRGNKTEGSV VGGKNISSPQ GNGITMSEPR RNRNLPSVRD NSVVSSSTRR STGYYGRTGR AGAVATLQAP
301: RPPTRADLNP SRSAEASRSP LNSYSRPISS NGRLRSLMMP GSPSEAGLSR SLMNRDTFRR YNMNGVAEVL LALERIEQDE ELTYEQLAVL ETNLFLNGMS
401: SFHDQHRDMR LDIDNMSYEE LLALEEKMGT VSTALSEEAL LKSLKSSIYR PNDESDDICL NKDDDVKCSI CQEEYVDGDE VGTLPCQHKY HVSCAQQWLR
501: MKNWCPICKT SAESQPHPFS

Arabidopsis Description

At5g24870 [Source:UniProtKB/TrEMBL;Acc:Q8L775]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.