Factsheet for TraesCS1D01G405800.9

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G398300.8	Wheat	cytosol	94.47	91.84
TraesCS1B01G426200.9	Wheat	cytosol	93.89	89.78
HORVU1Hr1G087900.1	Barley	cytosol	85.69	86.35
Os05t0564300-01	Rice	nucleus	52.1	54.6
KXG22536	Sorghum	nucleus	49.05	50.59
Zm00001d009571_P002	Maize	nucleus	48.66	49.8
Zm00001d039015_P002	Maize	cytosol	37.21	47.68
TraesCS3D01G244600.1	Wheat	nucleus	41.6	41.29
TraesCS3D01G260700.1	Wheat	nucleus	11.26	29.5
TraesCS5D01G286700.1	Wheat	nucleus	5.15	22.88
TraesCS5D01G319600.1	Wheat	cytosol, nucleus, plastid	6.87	21.05
TraesCS1D01G380000.2	Wheat	nucleus	13.36	20.23
Bra039659.1-P	Field mustard	nucleus	17.56	20.0
CDY24110	Canola	nucleus	17.56	20.0
CDY26006	Canola	nucleus	17.37	19.7
VIT_19s0014g01850.t01	Wine grape	nucleus	20.04	19.52
TraesCS4D01G192500.2	Wheat	cytosol, nucleus, vacuole	9.92	19.26
Solyc12g014070.1.1	Tomato	nucleus	19.66	19.25
PGSC0003DMT400039631	Potato	nucleus	19.66	19.22
CDY25871	Canola	nucleus	17.18	18.83
Bra038109.1-P	Field mustard	nucleus	17.18	18.75
AT1G53190.1	Thale cress	nucleus	17.56	18.62
KRH30071	Soybean	cytosol	12.21	18.6
CDY55839	Canola	nucleus	17.18	18.4
KRH26195	Soybean	nucleus	16.03	18.34
CDY68521	Canola	nucleus	15.27	18.14
KRH55161	Soybean	nucleus	15.84	18.12
CDX82450	Canola	nucleus	15.46	18.08
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	13.55	18.07
CDX75805	Canola	cytosol	15.27	18.06
AT3G15070.1	Thale cress	nucleus	16.6	17.9
Bra001582.1-P	Field mustard	nucleus	14.89	17.85
KRH22017	Soybean	nucleus	17.94	17.8
TraesCS2D01G432800.1	Wheat	nucleus	12.6	17.74
PGSC0003DMT400054921	Potato	nucleus	17.56	17.73
KRH55165	Soybean	nucleus	10.5	17.68
VIT_03s0097g00680.t01	Wine grape	nucleus	14.12	17.58
Bra027282.1-P	Field mustard	nucleus	14.89	17.53
TraesCS1D01G111500.1	Wheat	nucleus	17.75	17.35
Solyc10g007140.2.1	Tomato	nucleus	17.18	17.34
VIT_03s0088g01090.t01	Wine grape	nucleus	15.08	17.29
TraesCS2D01G397800.1	Wheat	cytosol	8.4	17.12
CDX97629	Canola	nucleus	14.31	17.01
KRH55090	Soybean	nucleus	11.45	16.13
TraesCS7D01G049800.1	Wheat	nucleus	7.63	15.94
TraesCS7D01G271800.4	Wheat	cytosol, mitochondrion, nucleus	8.97	15.67
TraesCS3D01G105300.1	Wheat	cytosol	14.12	14.29
TraesCS7D01G420400.1	Wheat	nucleus	15.46	14.14
TraesCS5D01G331600.1	Wheat	cytosol, mitochondrion, nucleus	8.78	13.53
TraesCS2D01G516000.1	Wheat	nucleus	16.79	13.15
TraesCS6D01G111500.2	Wheat	nucleus	15.08	13.1
TraesCS2D01G022900.1	Wheat	nucleus	16.6	12.41
Solyc07g062720.1.1	Tomato	nucleus	17.94	12.13
PGSC0003DMT400032385	Potato	nucleus	17.56	11.33

Protein Annotations

EnsemblPlants:TraesCS1D01G405800.9	EnsemblPlantsGene:TraesCS1D01G405800	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF67	PFAM:PF13639	PFscan:PS50089	SMART:SM00184
SUPFAM:SSF57850	TIGR:cd16481	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr1D:+:470071490..470074484

Molecular Weight (calculated)

56468.4 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.596

Length

524 amino acids

Sequence
(BLAST)

001: MPHRNMCWTH QGDNLESEEG QAQPENYSNG GTGSNLSNQG VQVALGVPGN TTSDGVRDSR GYYESINNQR QHAQNLYPYG GVDPSFVYPS TMYNPGMPTP
101: SVNRYVPHAS FGQGNPPPSP SYHQVATGTR DESGSSSSFG DAARESMKMR NAVTESGHHF DHGFASSSSS AHVPQNPAQG TWGASFESHG APNGSSADGP
201: NRATPMATHP ALARHGNYVF PAGHMVQGNA WTTHPANIIA DGVPHWAYNN ALHNPSGTMG MPNGSLQDYQ AGPSATFHGP LPHFNQIPVH STQTPAMLNH
301: IQMQGPQRQS NVVQGANPSG MVQGANPSGM VQGANPSGMV QGPNPAGMVQ GANRSRRAFT WDPCLPFSSS GHTNGPPVHA FFTDQVYNGS LRLLQQAAMA
401: TMSTFYDAIH LIDEQWDMGL DIDSMTYEDL LALQEQIGDV NTGLPERYIH QNLRVHQYVV PRAARGSDQS VEKDACIICQ EEFEARDLVG TLDCGHKYHE
501: ACIKQWLMVK NLCPICKATA LPAE

Best Arabidopsis Sequence Match ( AT3G15070.1 )
(BLAST)

001: MRQRNMMTGS DMEQNSQSFV PHPEPRIGTN YLYPDIPPVN TVPHLEAHSL QEPYDNNSMF YGPPQYHHQH ASNLGSGMST APNFYVPYVN YEAPPSFLLS
101: HGSNDAVVGV TSTEHERNAH FMDHGFKRKS SEVIPGNSQY PVAPCSFPQL NTSETAPFSF PHFGTYPQPL DQRSVRNRAG AATMDPLLSH GHNNFSQGNY
201: AAHPFPPLGS IWYDQHCNGN RSDGSSSLWS QAPAVPYMHG NIATGSIESG NVCFPRYHET SSSRNPTPSV YQRNHYISHH PVPPPPIVYP HMPSASYAET
301: LHPASYSHMG QVQSTGFRIN QYPGEDFVPA AILRHRELPH FRAMPANENA FWEVGDFYNA VNYVDHHQDM RLDIEDMSYE ELLALSDQIG TVKTGLSSED
401: VKELLKRRTS TRINLEEGPS TDLETDSCTI CQENYKNEDK IATLDCMHKY HAECLKKWLV IKNVCPICKS EALVIEKKKK LRLSSR

Arabidopsis Description

At3g15070/K15M2_22 [Source:UniProtKB/TrEMBL;Acc:Q94F54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.