Factsheet for Solyc07g062720.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032385	Potato	nucleus	82.32	78.57
Solyc12g014070.1.1	Tomato	nucleus	33.81	48.97
Solyc10g007140.2.1	Tomato	nucleus	30.19	45.09
VIT_19s0014g01850.t01	Wine grape	nucleus	26.06	37.55
VIT_03s0097g00680.t01	Wine grape	nucleus	18.06	33.25
VIT_03s0088g01090.t01	Wine grape	nucleus	19.48	33.04
VIT_03s0088g00930.t01	Wine grape	nucleus, plastid	16.65	32.82
KRH55161	Soybean	nucleus	18.71	31.66
KRH26195	Soybean	nucleus	18.71	31.66
KRH22017	Soybean	nucleus	21.42	31.44
KRH30071	Soybean	cytosol	13.68	30.81
CDY24110	Canola	nucleus	16.9	28.48
Bra039659.1-P	Field mustard	nucleus	16.9	28.48
CDY26006	Canola	nucleus	16.77	28.14
AT1G53190.1	Thale cress	nucleus	17.94	28.14
CDY25871	Canola	nucleus	16.52	26.78
KRH55165	Soybean	nucleus	10.71	26.69
Bra038109.1-P	Field mustard	nucleus	16.52	26.67
CDY55839	Canola	nucleus	16.52	26.18
KRH55090	Soybean	nucleus	12.39	25.81
Solyc12g010500.1.1	Tomato	nucleus	5.94	25.7
AT3G15070.1	Thale cress	nucleus	15.87	25.31
CDX75805	Canola	cytosol	14.32	25.06
Bra027282.1-P	Field mustard	nucleus	13.94	24.27
CDY68521	Canola	nucleus	13.81	24.26
Bra001582.1-P	Field mustard	nucleus	13.68	24.26
CDX82450	Canola	nucleus	13.94	24.11
CDX97629	Canola	nucleus	13.42	23.58
Solyc12g019190.1.1	Tomato	mitochondrion	6.06	21.36
Solyc09g007530.2.1	Tomato	nucleus	14.58	20.85
Os05t0564300-01	Rice	nucleus	12.9	20.0
Solyc12g019200.1.1	Tomato	mitochondrion	5.68	20.0
Solyc11g062260.1.1	Tomato	nucleus	6.32	19.92
EES03404	Sorghum	nucleus	13.29	19.77
Solyc12g040390.1.1	Tomato	nucleus, plastid	7.74	19.67
Os01t0667700-02	Rice	nucleus	13.29	19.66
Zm00001d011541_P004	Maize	nucleus	13.16	19.25
Zm00001d009571_P002	Maize	nucleus	12.65	19.14
HORVU1Hr1G087900.1	Barley	cytosol	12.77	19.04
KXG22536	Sorghum	nucleus	12.39	18.9
TraesCS3B01G272400.4	Wheat	nucleus	12.77	18.75
Solyc03g026150.2.1	Tomato	nucleus	5.68	18.57
TraesCS3D01G244600.1	Wheat	nucleus	12.65	18.56
HORVU3Hr1G061010.4	Barley	nucleus	12.52	18.44
TraesCS3A01G246900.3	Wheat	nucleus	12.52	18.41
TraesCS1A01G398300.8	Wheat	cytosol	12.77	18.37
TraesCS1B01G426200.9	Wheat	cytosol	12.77	18.07
TraesCS1D01G405800.9	Wheat	cytosol	12.13	17.94
Solyc03g118840.2.1	Tomato	nucleus	8.77	17.57
Solyc05g008840.1.1	Tomato	nucleus, plastid	4.39	15.45
Solyc12g088740.1.1	Tomato	nucleus	13.81	15.44
Solyc10g050170.1.1	Tomato	mitochondrion, nucleus	13.81	14.74
Solyc04g078680.2.1	Tomato	nucleus	13.68	14.68
Solyc01g087060.2.1	Tomato	nucleus	6.97	14.59
Solyc01g107940.2.1	Tomato	nucleus	13.16	14.43
Solyc01g107930.2.1	Tomato	nucleus	13.29	14.35
Solyc09g007620.1.1	Tomato	nucleus	3.23	14.29
Zm00001d039015_P002	Maize	cytosol	7.48	14.18
Solyc08g006460.2.1	Tomato	nucleus	9.55	13.94
Solyc12g096420.1.1	Tomato	nucleus	9.81	13.79
Solyc02g005480.2.1	Tomato	nucleus	3.48	10.07

Protein Annotations

EnsemblPlants:Solyc07g062720.1.1	EnsemblPlantsGene:Solyc07g062720.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22937	PANTHER:PTHR22937:SF48	PFAM:PF13639	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000276B84D	UniProt:K4CGV5	MapMan:35.1	:

Description

No Description!

Coordinates

chr7:-:65406816..65412541

Molecular Weight (calculated)

82199.8 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.437

Length

775 amino acids

Sequence
(BLAST)

001: MKVNNDKNVL ATLQLSPGNI HRKNKPEINY FSLNFSFAIL HQAQFGYYPQ DCTRIMGERN TPHSNHFMTL GADQQSQAYI YPEPCMMHGS FTAFPHPNVN
101: TTVPAPGSLG NFYVPHLPGH QEGALVYGRP PANGIQQWHY ITNVGAAFAP PANYFYPYVA APAALRTSPV PANHGLRDGL PVSGTQGSTG NNADNLGRND
201: PRMDSTRESS KQRDVAGNSG NLQHHSALAG PSTSAAPVIT TANESDVSSN DSVSREHGGS DSTPFLENGT ASATMDLPVP ANHGLRVGLP VSGTTDDSVS
301: REHGGSDSAP LLGNGATSAT MDLPVPANHV LSDGLPVSGT TNDSVSREHG VSDSAPPLGN GVTSATMDFP VPANHVLRDG LPVSGTTDDS VSRESGGSDS
401: APLLQNGAMS ATMDLPVPAN HGLRDGLPVS GTTDDSVSRA HVVSGSALLL ENGVQRSGSR SASGPDTVLQ NNNNHLLQGN YVGQAYQFPG NPWLNMPSSS
501: SGSTAPSWAW SQAAPITYPP VGAGGYVIGA GNMAMQGYQI PSSNGGLTGF MYPPIPQGSQ QYHPHLSPNM QSMAGHTVST YAQMTASPGR QLQLTSSNMG
601: PLLPSNFRMY RPHQRELTIR GTNASHHNLR TGVSMLGVPR FRGVAIVDQH RDMRLDVDRM SYEELLALGE RIGNVTLGLS EDIIAANLKT RIFLSTETPT
701: PLENVASDED QKTVCVICQS DYKDGEKIGI LNCGHEYHEE CVQKWLAVKN SCAICKSKAL STEKKDKEVV TTGGD

Best Arabidopsis Sequence Match ( AT1G53190.2 )
(BLAST)

001: MGQRNRNVDL EMEQQQSQAS LQAEPCILLG SFPQQPDNNN MPAMVAHVPN LEPHSLQDPT YDNSAMFYGL PQYHHHPHQR VPTNFYVPYV AFQAPPGQLP
101: SSSSHGVVGV SPDHEYERNA HFMDHTRGTY KRKNAEGIPG QPQYLSTLAA PFNTPETIAP FGGARNRPGA VTVNTVLPSH APNNFIQGNY AGHHPFPPPG
201: SMWYDQHHGR SDGSPSFWPT PYMHGSNIFA GSIESSSRNP TSFMYPSQLN PRDHYYSHHH HPAPPPVQGM RGQNATLYPH TASSASYRVP PGSFTPQNTM
301: NSGPLGSEMG SSHMGPVQPT GFRIYQHHQR DDSVPVATLR QHRGGVPRLR VMPDDEVALL EFGDFLGGSG NNHIDHHRDM RLDIEEMSYE ELLALSERIG
401: TVNTGLPEED VKNHLKTRTC SGINFEKESS SPRTKDLETE PCTICQESFK NEEKIATLDC GHEYHAECLE KWLIVKNVCP ICKSEALVME KRKV

Arabidopsis Description

At1g53190 [Source:UniProtKB/TrEMBL;Acc:Q5EAI9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.